Bier2000_GlycolyticOscillation

Model Identifier
BIOMD0000000254
Short description

This a model from the article:
How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment
Bier M, Bakker BM, Westerhoff HV. Biophys. J2000 Mar;78(3):1087-93. 10692299,
Abstract:
Of all the lifeforms that obtain their energy from glycolysis, yeast cells are among the most basic. Under certain conditions the concentrations of the glycolytic intermediates in yeast cells can oscillate. Individual yeast cells in a suspension can synchronize their oscillations to get in phase with each other. Although the glycolytic oscillations originate in the upper part of the glycolytic chain, the signaling agent in this synchronization appears to be acetaldehyde, a membrane-permeating metabolite at the bottom of the anaerobic part of the glycolytic chain. Here we address the issue of how a metabolite remote from the pacemaking origin of the oscillation may nevertheless control the synchronization. We present a quantitative model for glycolytic oscillations and their synchronization in terms of chemical kinetics. We show that, in essence, the common acetaldehyde concentration can be modeled as a small perturbation on the "pacemaker" whose effect on the period of the oscillations of cells in the same suspension is indeed such that a synchronization develops.

Format
SBML (L2V4)
Related Publication
  • How yeast cells synchronize their glycolytic oscillations: a perturbation analytic treatment.
  • M Bier, B M Bakker, H V Westerhoff
  • Biophysical journal , 3/ 2000 , Volume 78 , Issue 3 , pages: 1087-1093 , PubMed ID: 10692299
Contributors
Submitter of the first revision: Vijayalakshmi Chelliah
Submitter of this revision: Lucian Smith
Curator: Lucian Smith
Modeller: Vijayalakshmi Chelliah

Metadata information

is (2 statements)
BioModels Database BIOMD0000000254
BioModels Database MODEL1007260000

isDescribedBy (1 statement)
PubMed 10692299

hasTaxon (1 statement)
isVersionOf (1 statement)
Gene Ontology glycolytic process

hasProperty (1 statement)
Mathematical Modelling Ontology Ordinary differential equation model


Curation status
Curated


Connected external resources