Model files
(1)
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BIOMD0000000279_url.xml |
SBML L2V4 representation of Komarova2005_PTHaction_OsteoclastOsteoblastCoupling |
16.23 KB |
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Additional files
(37)
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BIOMD0000000279-biopax2.owl |
Auto-generated BioPAX (Level 2) |
5.68 KB |
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BIOMD0000000279-biopax3.owl |
Auto-generated BioPAX (Level 3) |
6.07 KB |
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BIOMD0000000279-matlab.m |
Auto-generated Matlab file. |
4.61 KB |
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BIOMD0000000279-octave.m |
Auto-generated Octave file. |
4.61 KB |
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BIOMD0000000279.m |
Auto-generated Octave file |
4.61 KB |
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BIOMD0000000279.ode |
Auto-generated ODE file for XPP. |
2.74 KB |
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BIOMD0000000279.pdf |
Auto-generated PDF file |
143.64 KB |
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BIOMD0000000279.png |
Auto-generated Reaction graph (PNG) |
5.04 KB |
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BIOMD0000000279.svg |
Auto-generated Reaction graph (SVG) |
868.00 Bytes |
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curation_image.png |
Reproduced figure(s) from original curation. |
37.13 KB |
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curation_notes.txt |
Notes from original curation (describes curation_image). |
816.00 Bytes |
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figA_blue.cps |
Komarova (2005): Simulation of Osteoclasts, Osteoblasts and Bone Mass upon stimulation by PTH with an increase in g21 from -0.5 to -0.1, 0.1 and 0.3 as a 1-d burst. [refer Figure 1B of the reference publication]. * Panel A: g21 = -0.1 (green). [figA_green.cps] * Panel A: g21 = 0.1 (blue). [figA_blue.cps] * Panel A: g21 = 0.3 (red). [figA_red.cps] |
36.70 KB |
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figA_blue.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.61 KB |
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figA_green.cps |
Komarova (2005): Simulation of Osteoclasts, Osteoblasts and Bone Mass upon stimulation by PTH with an increase in g21 from -0.5 to -0.1, 0.1 and 0.3 as a 1-d burst. [refer Figure 1B of the reference publication].
* Panel A: g21 = -0.1 (green). [figA_green.cps]
* Panel A: g21 = 0.1 (blue). [figA_blue.cps]
* Panel A: g21 = 0.3 (red). [figA_red.cps] |
36.70 KB |
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figA_green.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.61 KB |
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figA_red.cps |
Komarova (2005): Simulation of Osteoclasts, Osteoblasts and Bone Mass upon stimulation by PTH with an increase in g21 from -0.5 to -0.1, 0.1 and 0.3 as a 1-d burst. [refer Figure 1B of the reference publication]. * Panel A: g21 = -0.1 (green). [figA_green.cps] * Panel A: g21 = 0.1 (blue). [figA_blue.cps] * Panel A: g21 = 0.3 (red). [figA_red.cps] |
36.70 KB |
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figA_red.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.61 KB |
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figB1_blue.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). |
37.51 KB |
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figB1_blue.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.59 KB |
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figB1_green.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication].
* Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps]
* Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps]
* Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps]
* Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps]
* Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps]
* Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps]
* Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps]
* Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps]
* Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB1_green.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.60 KB |
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figB1_red.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB1_red.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.59 KB |
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figB2_blue.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB2_blue.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.59 KB |
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figB2_green.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB2_green.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.60 KB |
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figB2_red.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB2_red.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.59 KB |
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figB3_blue.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB3_blue.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.59 KB |
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figB3_green.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB3_green.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.60 KB |
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figB3_red.cps |
Komarova (2005): The changes in bone mass as observed by an increase in g21 from -0.5 to 0, 0.1 and 0.15 for 1-day, with 3 sets of g12 and k2 values. [refer Figure 2A of the reference publication]. * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.0 (green). [figB1_green.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.1 (blue). [figB1_blue.cps] * Panel B1: g12 = 0.5; k2 = 0.005; g21 = 0.15 (red). [figB1_red.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.0 (green). [figB2_green.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.1 (blue). [figB2_blue.cps] * Panel B2: g12 = 0.98; k2 = 0.0017; g21 = 0.15 (red). [figB2_red.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.0 (green). [figB3_green.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.1 (blue). [figB3_blue.cps] * Panel B3: g12 = 1.4; k2 = 0.00075; g21 = 0.15 (red). [figB3_red.cps] |
37.51 KB |
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figB3_red.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
13.59 KB |
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manifest.xml |
Auto-generated manifest file for OMEX archives. |
4.37 KB |
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metadata.rdf |
Auto-generated annotation metadata file. |
5.69 KB |
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