Model files
(1)
|
BIOMD0000000278_url.xml |
SBML L2V4 representation of Lemaire2004 - Role of RANK/RANKL/OPG pathway in bone remodelling process |
17.71 KB |
Preview |
Download |
Additional files
(78)
|
BIOMD0000000278-biopax2.owl |
Auto-generated BioPAX (Level 2) |
4.73 KB |
Preview |
Download |
BIOMD0000000278-biopax3.owl |
Auto-generated BioPAX (Level 3) |
5.15 KB |
Preview |
Download |
BIOMD0000000278-matlab.m |
Auto-generated Matlab file. |
5.51 KB |
Preview |
Download |
BIOMD0000000278-octave.m |
Auto-generated Octave file. |
5.51 KB |
Preview |
Download |
BIOMD0000000278.m |
Auto-generated Octave file |
5.51 KB |
Preview |
Download |
BIOMD0000000278.ode |
Auto-generated ODE file for XPP. |
3.50 KB |
Preview |
Download |
BIOMD0000000278.pdf |
Auto-generated PDF file |
149.08 KB |
Preview |
Download |
BIOMD0000000278.png |
Auto-generated Reaction graph (PNG) |
5.04 KB |
Preview |
Download |
BIOMD0000000278.sci |
Auto-generated Scilab file |
2.56 KB |
Preview |
Download |
BIOMD0000000278.svg |
Auto-generated Reaction graph (SVG) |
868.00 Bytes |
Preview |
Download |
curation_image.png |
Reproduced figure(s) from original curation. |
67.30 KB |
Preview |
Download |
curation_notes.txt |
Notes from original curation (describes curation_image). |
618.00 Bytes |
Preview |
Download |
lemaire04_addB-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.01 KB |
Preview |
Download |
lemaire04_addB-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.35 KB |
Preview |
Download |
lemaire04_addB-matlab.m |
Auto-generated Matlab file. |
5.49 KB |
Preview |
Download |
lemaire04_addB-octave.m |
Auto-generated Octave file. |
5.49 KB |
Preview |
Download |
lemaire04_addB.cps |
This model is an extension of the core model in which Osteoblasts (B) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 0.0001pM/day. The model reproduces (Figure 1 of the curation figure), the first plot of Figure 2A of the reference publication. |
40.21 KB |
Preview |
Download |
lemaire04_addB.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.67 KB |
Preview |
Download |
lemaire04_addB.xml |
This model is an extension of the core model in which Osteoblasts (B) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 0.0001pM/day. The model reproduces (Figure 1 of the curation figure), the first plot of Figure 2A of the reference publication. |
11.99 KB |
Preview |
Download |
lemaire04_addC-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.01 KB |
Preview |
Download |
lemaire04_addC-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.35 KB |
Preview |
Download |
lemaire04_addC-matlab.m |
Auto-generated Matlab file. |
5.49 KB |
Preview |
Download |
lemaire04_addC-octave.m |
Auto-generated Octave file. |
5.49 KB |
Preview |
Download |
lemaire04_addC.cps |
This model is an extension of the core model in which Osteoclasts (C) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 0.0001pM/day. The model reproduces (Figure 2 of the curation figure), the middle plot of Figure 2A of the reference publication. |
40.24 KB |
Preview |
Download |
lemaire04_addC.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.67 KB |
Preview |
Download |
lemaire04_addC.xml |
This model is an extension of the core model in which Osteoclasts (C) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 0.0001pM/day. The model reproduces (Figure 2 of the curation figure), the middle plot of Figure 2A of the reference publication. |
12.00 KB |
Preview |
Download |
lemaire04_addOPG-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.01 KB |
Preview |
Download |
lemaire04_addOPG-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.34 KB |
Preview |
Download |
lemaire04_addOPG-matlab.m |
Auto-generated Matlab file. |
5.38 KB |
Preview |
Download |
lemaire04_addOPG-octave.m |
Auto-generated Octave file. |
5.38 KB |
Preview |
Download |
lemaire04_addOPG.cps |
This model is an extension of the core model in which, the Osteoprotegerin-OPGs (I_O) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 200000pM/day. The model reproduces (Figure 8 of the curation figure), the middle plot of Figure 2C of the reference publication. |
39.63 KB |
Preview |
Download |
lemaire04_addOPG.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.12 KB |
Preview |
Download |
lemaire04_addOPG.xml |
This model is an extension of the core model in which, the Osteoprotegerin-OPGs (I_O) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 200000pM/day. The model reproduces (Figure 8 of the curation figure), the middle plot of Figure 2C of the reference publication. |
11.81 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.01 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.35 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL-matlab.m |
Auto-generated Matlab file. |
5.43 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL-octave.m |
Auto-generated Octave file. |
5.43 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL.cps |
This model is an extension of the core model in which, RANKLs (I_L) are being added constantly from day 20 at 10000pM/day and Osteoprotegerin-OPGs (I_O) being added constantly 60 days later (i.e. at day 80) at 90000pM/day. The model reproduces (Figure 9 of the curation figure), the last plot of Figure 2C of the reference publication. |
40.61 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL.ode |
Auto-generated ODE file for XPP. |
3.62 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.28 KB |
Preview |
Download |
lemaire04_addOPG_addRANKL.xml |
This model is an extension of the core model in which, RANKLs (I_L) are being added constantly from day 20 at 10000pM/day and Osteoprotegerin-OPGs (I_O) being added constantly 60 days later (i.e. at day 80) at 90000pM/day. The model reproduces (Figure 9 of the curation figure), the last plot of Figure 2C of the reference publication. |
12.08 KB |
Preview |
Download |
lemaire04_addPTH-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.01 KB |
Preview |
Download |
lemaire04_addPTH-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.34 KB |
Preview |
Download |
lemaire04_addPTH-matlab.m |
Auto-generated Matlab file. |
5.38 KB |
Preview |
Download |
lemaire04_addPTH-octave.m |
Auto-generated Octave file. |
5.38 KB |
Preview |
Download |
lemaire04_addPTH.cps |
This model is an extension of the core model in which, PTHs (I_P) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 1000pM/day. The model reproduces (Figure 7 of the curation figure), the first plot of Figure 2C of the reference publication. |
39.30 KB |
Preview |
Download |
lemaire04_addPTH.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.12 KB |
Preview |
Download |
lemaire04_addPTH.xml |
This model is an extension of the core model in which, PTHs (I_P) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 1000pM/day. The model reproduces (Figure 7 of the curation figure), the first plot of Figure 2C of the reference publication. |
11.78 KB |
Preview |
Download |
lemaire04_addR-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.02 KB |
Preview |
Download |
lemaire04_addR-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.36 KB |
Preview |
Download |
lemaire04_addR-matlab.m |
Auto-generated Matlab file. |
5.50 KB |
Preview |
Download |
lemaire04_addR-octave.m |
Auto-generated Octave file. |
5.50 KB |
Preview |
Download |
lemaire04_addR.cps |
This model is an extension of the core model in which the Responding Osteoblasts (R) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 0.0001pM/day. The model reproduces (Figure 3 of the curation figure), the last plot of Figure 2A of the reference publication. |
41.03 KB |
Preview |
Download |
lemaire04_addR.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.67 KB |
Preview |
Download |
lemaire04_addR.xml |
This model is an extension of the core model in which the Responding Osteoblasts (R) are being added constantly from day 20 to day 80 (i.e. for 60 days) at 0.0001pM/day. The model reproduces (Figure 3 of the curation figure), the last plot of Figure 2A of the reference publication. |
12.03 KB |
Preview |
Download |
lemaire04_removeB-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.02 KB |
Preview |
Download |
lemaire04_removeB-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.35 KB |
Preview |
Download |
lemaire04_removeB-matlab.m |
Auto-generated Matlab file. |
5.51 KB |
Preview |
Download |
lemaire04_removeB-octave.m |
Auto-generated Octave file. |
5.51 KB |
Preview |
Download |
lemaire04_removeB.cps |
This model is an extension of the core model in which, Osteoblasts (B) are being removed constantly from day 20 to day 80 (i.e. for 60 days) at 8.3e-005pM/day. The model reproduces (Figure 4 of the curation figure), the first plot of Figure 2B of the reference publication. |
40.51 KB |
Preview |
Download |
lemaire04_removeB.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.71 KB |
Preview |
Download |
lemaire04_removeB.xml |
This model is an extension of the core model in which, Osteoblasts (B) are being removed constantly from day 20 to day 80 (i.e. for 60 days) at 8.3e-005pM/day. The model reproduces (Figure 4 of the curation figure), the first plot of Figure 2B of the reference publication. |
12.02 KB |
Preview |
Download |
lemaire04_removeC-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.02 KB |
Preview |
Download |
lemaire04_removeC-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.35 KB |
Preview |
Download |
lemaire04_removeC-matlab.m |
Auto-generated Matlab file. |
5.51 KB |
Preview |
Download |
lemaire04_removeC-octave.m |
Auto-generated Octave file. |
5.51 KB |
Preview |
Download |
lemaire04_removeC.cps |
This model is an extension of the core model in which Osteoclasts (C) are being removed constantly from day 20 to day 80 (i.e. for 60 days) at 0.00029pM/day. The model reproduces (Figure 5 of the curation figure), the middle plot of Figure 2B of the reference publication. |
40.80 KB |
Preview |
Download |
lemaire04_removeC.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.71 KB |
Preview |
Download |
lemaire04_removeC.xml |
This model is an extension of the core model in which Osteoclasts (C) are being removed constantly from day 20 to day 80 (i.e. for 60 days) at 0.00029pM/day. The model reproduces (Figure 5 of the curation figure), the middle plot of Figure 2B of the reference publication. |
12.03 KB |
Preview |
Download |
lemaire04_removeR-biopax2.owl |
Auto-generated BioPAX (Level 2) file. |
1.02 KB |
Preview |
Download |
lemaire04_removeR-biopax3.owl |
Auto-generated BioPAX (Level 3) file. |
1.35 KB |
Preview |
Download |
lemaire04_removeR-matlab.m |
Auto-generated Matlab file. |
5.51 KB |
Preview |
Download |
lemaire04_removeR-octave.m |
Auto-generated Octave file. |
5.51 KB |
Preview |
Download |
lemaire04_removeR.cps |
This model is an extension of the core model in which the Responding Osteoblasts (R) are being removed constantly from day 20 to day 80 (i.e. for 60 days) at 0.00012pM/day. The model reproduces (Figure 6 of the curation figure), the last plot of Figure 2B of the reference publication. |
40.84 KB |
Preview |
Download |
lemaire04_removeR.sedml |
CRBM-processed SED-ML file, based on original COPASI save file export. |
21.71 KB |
Preview |
Download |
lemaire04_removeR.xml |
This model is an extension of the core model in which the Responding Osteoblasts (R) are being removed constantly from day 20 to day 80 (i.e. for 60 days) at 0.00012pM/day. The model reproduces (Figure 6 of the curation figure), the last plot of Figure 2B of the reference publication. |
12.04 KB |
Preview |
Download |
manifest.xml |
Auto-generated manifest file for OMEX archives. |
9.51 KB |
Preview |
Download |
metadata.rdf |
Auto-generated annotation metadata file. |
5.69 KB |
Preview |
Download |