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Report for CCDS440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
440.1 Public Homo sapiens 1 NT5C1A 24 110 108 CCDS HistoryNCBI Gene:84618Re-query CCDS DB by CCDS ID:440.1Re-query CCDS DB by GeneID:84618See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235628.2 ENSP00000235628.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235628.2Link to Ensembl Protein Viewer:ENSP00000235628.1Re-query CCDS DB by Nucleotide ID:ENST00000235628Re-query CCDS DB by Protein ID:ENSP00000235628
Original member Current member NCBI NM_032526.3 NP_115915.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032526.3Link to Protein Sequence:NP_115915.1Re-query CCDS DB by Nucleotide ID:NM_032526Re-query CCDS DB by Protein ID:NP_115915Link to BLAST:NP_115915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115915.1 368 Q9BXI3 368 100% 0 0

Chromosomal Locations for CCDS 440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 39659121 39659486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39661079 39661263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39663312 39663434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39665521 39665650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39666069 39666236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 39671904 39672038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGAACCTGGGCAGCCCCGGGAGCCCCAGGAGCCCCGCGAGCCCGGGCCAGGAGCGGAGACCGCTGCGG
CC
CCGGTCTGGGAGGAAGCCAAGATTTTCTACGACAACCTCGCGCCCAAGAAGAAACCCAAATCGCCCAA
G
CCTCAGAATGCAGTCACCATCGCTGTGTCCTCCCGAGCCTTGTTTCGCATGGACGAGGAGCAGCAGATC
TAC
ACGGAGCAGGGCGTGGAGGAGTACGTGCGCTACCAGCTGGAACATGAGAACGAACCCTTCAGTCCCG
GG
CCAGCCTTCCCTTTTGTGAAGGCTCTGGAGGCCGTGAACAGGCGGCTGCGGGAGCTGTACCCTGATAG
T
GAGGACGTCTTCGACATCGTCCTCATGACTAACAACCATGCTCAAGTGGGTGTCCGCCTCATCAACAGT
ATC
AACCACTATGACCTGTTCATCGAGAGGTTCTGCATGACAGGTGGGAACAGCCCGATCTGCTACCTCA
AG
GCCTATCACACCAACCTCTACTTGTCAGCCGATGCGGAAAAAGTGCGAGAAGCCATTGATGAGGGGAT
C
GCAGCTGCCACCATCTTCAGCCCCAGCAGGGATGTGGTTGTGTCCCAGAGTCAGCTGCGCGTGGCCTTC
GAT
GGGGACGCCGTGCTCTTCTCGGACGAGTCGGAGCGCATCGTCAAGGCCCACGGGCTGGACCGATTCT
TC
GAGCATGAGAAGGCCCACGAGAACAAACCTCTGGCTCAGGGCCCCTTAAAGGGCTTTCTGGAGGCACT
G
GGTAGGTTGCAGAAGAAGTTCTACTCCAAAGGCCTGCGGCTGGAGTGCCCAATTCGTACCTACTTGGTG
ACA
GCACGCAGTGCAGCCAGTTCCGGGGCCCGGGCTCTCAAGACCCTGCGCAGCTGGGGCCTGGAGACAG
AT
GAAGCCTTGTTCCTTGCTGGAGCGCCCAAGGGCCCTCTCCTTGAGAAGATCCGCCCACACATCTTCTT
T
GATGACCAGATGTTCCATGTGGCTGGGGCTCAGGAGATGGGCACTGTGGCCGCCCATGTGCCTTATGGT
GTG
GCACAGACACCCCGGCGGACTGCACCTGCAAAGCAGGCCCCATCTGCACAGTAG


Translation (368 aa):
MEPGQPREPQEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKSPKPQNAVTIAVSSRALFRMDEEQQI
Y
TEQGVEEYVRYQLEHENEPFSPGPAFPFVK
ALEAVNRRLRELYPDSEDVFDIVLMTNNHAQVGVRLINS
I
NHY
DLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVREAIDEGIAAATIFSPSRDVVVSQSQLRVAF
D
GDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQ
GPLKGFLEALGRLQKKFYSKGLRLECPIRTYLV
T
ARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYG
V
AQTPRRTAPAKQAPSAQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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