Transcript: ENSDART00000123350.3 sptlc2a-201

Description

serine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]

Location

About this transcript

This transcript has 12 exons, is annotated with 11 domains and features, is associated with 1328 variant alleles and maps to 205 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000123350.3	sptlc2a-201	1878	558aa	ENSDARP00000109825.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000149494.3	sptlc2a-204	2017	236aa	ENSDARP00000123952.1	Nonsense mediated decay	-
ENSDART00000148488.2	sptlc2a-202	703	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000148521.2	sptlc2a-203	539	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,878 bps, Translation length: 558 residues

Version

ENSDART00000123350.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.