Transcript: ENSDART00000131638.3 tmem30b-202

Description

transmembrane protein 30B [Source:ZFIN;Acc:ZDB-GENE-040704-17]

Location

Chromosome 17: 28,102,487-28,107,245 forward strand.

About this transcript

This transcript has 7 exons, is annotated with 5 domains and features, is associated with 266 variant alleles and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000054122.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000076265.4	tmem30b-201	2678	341aa	ENSDARP00000070742.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6GMG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188078.1	tmem30b-204	3600	341aa	ENSDARP00000151989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6GMG4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000131638.3	tmem30b-202	891	268aa	ENSDARP00000115898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000131881.2	tmem30b-203	749	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 891 bps, Translation length: 268 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000131638.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000131638.3 tmem30b-202

Summary

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Transcript: ENSDART00000131638.3 tmem30b-202

Summary

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