Transcript: ENSDART00000131865.3 sgce-202

Description

sarcoglycan, epsilon [Source:ZFIN;Acc:ZDB-GENE-030724-1]

Location

Chromosome 19: 41,038,668-41,052,240 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 3 domains and features, is associated with 50 variant alleles and maps to 166 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012138.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111982.4	sgce-201	1716	414aa	ENSDARP00000099762.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193142.1	sgce-204	1457	405aa	ENSDARP00000156933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000151120.2	sgce-203	821	154aa	ENSDARP00000125827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000131865.3	sgce-202	695	122aa	ENSDARP00000113758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 695 bps, Translation length: 122 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000131865.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000131865.3 sgce-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000131865.3 sgce-202

Summary

About Us

Get help

Our sister sites

Follow us