Transcript: ENSDART00000133902.3 clstn1-203

Description

calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]

Location

Chromosome 23: 29,580,584-29,667,722 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 29 domains and features, is associated with 1617 variant alleles and maps to 415 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000031720.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000133902.3	clstn1-203	6281	954aa	ENSDARP00000119688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R520	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000129248.3	clstn1-202	3658	971aa	ENSDARP00000109493.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9F2UUN9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000059339.6	clstn1-201	2895	964aa	ENSDARP00000059338.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9F2Y9R0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000158302.2	clstn1-204	1065	101aa	ENSDARP00000139138.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

Summary

Statistics

Exons: 17, Coding exons: 17, Transcript length: 6,281 bps, Translation length: 954 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: F1R520

Version

ENSDART00000133902.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000133902.3 clstn1-203

Summary

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Transcript: ENSDART00000133902.3 clstn1-203

Summary

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