Transcript: ENSDART00000139472.2 crata-201

Description

carnitine O-acetyltransferase a [Source:ZFIN;Acc:ZDB-GENE-040927-17]

Location

About this transcript

This transcript has 13 exons, is annotated with 8 domains and features, is associated with 86 variant alleles and maps to 153 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000181535.1	crata-202	5129	631aa	ENSDARP00000146631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q642H6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000139472.2	crata-201	2528	618aa	ENSDARP00000116697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 13, Coding exons: 13, Transcript length: 2,528 bps, Translation length: 618 residues

Version

ENSDART00000139472.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.