Transcript: ENSDART00000154285.2

Description

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba [Source:NCBI gene (formerly Entrezgene);Acc:562398]

Location

Chromosome 2: 49,232,559-49,330,432 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 11 domains and features, is associated with 2442 variant alleles and maps to 200 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000036626.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000179089.2	-	2688	895aa	ENSDARP00000144213.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000175147.2	-	2619	872aa	ENSDARP00000143728.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y9T7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000154285.2	-	1720	573aa	ENSDARP00000129305.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 15, Transcript length: 1,720 bps, Translation length: 573 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000154285.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000154285.2

Summary

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Transcript: ENSDART00000154285.2

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