Transcript: ENSDART00000167811.2 ptbp1b-205

Description

polypyrimidine tract binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-9796]

Location

Chromosome 11: 14,333,441-14,340,783 forward strand.

About this transcript

This transcript has 6 exons, is associated with 144 variant alleles and maps to 100 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000031907.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000039822.9	ptbp1b-201	3619	564aa	ENSDARP00000039821.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171969.2	ptbp1b-206	765	223aa	ENSDARP00000136574.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000137347.2	ptbp1b-203	341	92aa	ENSDARP00000116727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000132997.2	ptbp1b-202	311	35aa	ENSDARP00000120697.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000167811.2	ptbp1b-205	824	76aa	ENSDARP00000134445.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146737.2	ptbp1b-204	801	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 3, Transcript length: 824 bps, Translation length: 76 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000167811.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167811.2 ptbp1b-205

Summary

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Transcript: ENSDART00000167811.2 ptbp1b-205

Summary

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