Transcript: ENSMUST00000176684.8 Irx4-202

Description

Iroquois homeobox 4 [Source:MGI Symbol;Acc:MGI:1355275]

Location

Chromosome 13: 73,408,598-73,417,727 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 22 domains and features, is associated with 816 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000021604.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000022095.10	Irx4-201	2589	515aa	ENSMUSP00000022095.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26629	Q9QY61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000176684.8	Irx4-202	2384	515aa	ENSMUSP00000134738.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS26629	Q9QY61	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 2,384 bps, Translation length: 515 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9QY61

CCDS

This transcript is a member of the Mouse CCDS set: CCDS26629

Transcript Support Level (TSL)

TSL:5

Version

ENSMUST00000176684.8

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

alternative 5' UTR [Definitions]

not organism-supported

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENSMUST00000176684.8 Irx4-202

Summary

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Transcript: ENSMUST00000176684.8 Irx4-202

Summary

About Us

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