Transcript: ENSMUST00000238023.2 Fads2-203

Description

fatty acid desaturase 2 [Source:MGI Symbol;Acc:MGI:1930079]

Gene Synonyms

2900042M13Rik, Fads2a

Location

Chromosome 19: 10,041,448-10,048,551 reverse strand.

About this transcript

This transcript has 8 exons, is associated with 839 variant alleles and maps to 201 oligo probes.

Gene

This transcript is a product of gene ENSMUSG00000024665.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000025567.9	Fads2-201	3150	444aa	ENSMUSP00000025567.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29571	Q9Z0R9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235937.2	Fads2-202	355	118aa	ENSMUSP00000158465.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BBD1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSMUST00000238023.2	Fads2-203	879	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 879 bps,

Version

ENSMUST00000238023.2

Type

Protein coding CDS not defined

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSMUST00000238023.2 Fads2-203

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Transcript: ENSMUST00000238023.2 Fads2-203

Summary

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