Transcript: ENSRNOT00000025989.5 Synpo-202

Description

synaptopodin [Source:RGD Symbol;Acc:620668]

Location

About this transcript

This transcript has 7 exons, is annotated with 4 domains and features, is associated with 232 variant alleles and maps to 194 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000093773.1	Synpo-204	4719	1029aa	ENSRNOP00000094210.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I6AKF5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSRNOT00000103982.1	Synpo-206	6486	976aa	ENSRNOP00000087286.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Z327	-
ENSRNOT00000102376.1	Synpo-205	3534	931aa	ENSRNOP00000077576.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Z327	-
ENSRNOT00000025934.6	Synpo-201	3371	986aa	ENSRNOP00000025934.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UHQ9	-
ENSRNOT00000025989.5	Synpo-202	3353	248aa	ENSRNOP00000025989.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0H2UHR2	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSRNOT00000064686.2	Synpo-203	2678	692aa	ENSRNOP00000061109.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9Z327-3	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 3,353 bps, Translation length: 248 residues

Version

ENSRNOT00000025989.5

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.