Transcript: ENSRNOT00000086905.2 Hcfc2-201

Description

host cell factor C2 [Source:RGD Symbol;Acc:1307385]

Gene Synonyms

HCF-2, LOC314704, MGC95223

Location

About this transcript

This transcript has 14 exons, is annotated with 20 domains and features, is associated with 165 variant alleles and maps to 170 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000086905.2	Hcfc2-201	2379	723aa	ENSRNOP00000070255.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2JXF9 Q5RKG2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000093791.1	Hcfc2-202	2198	661aa	ENSRNOP00000078223.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8I5Y755	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 2,379 bps, Translation length: 723 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RKG2

Version

ENSRNOT00000086905.2

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.