Transcript: ENSRNOT00000100500.1 Rpf1-202

Description

ribosome production factor 1 [Source:RGD Symbol;Acc:1559755]

Gene Synonyms

Bxdc5

Location

About this transcript

This transcript has 8 exons, is annotated with 13 domains and features, is associated with 34 variant alleles and maps to 114 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSRNOT00000021705.8	Rpf1-201	1551	367aa	ENSRNOP00000021705.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1MA20	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSRNOT00000100500.1	Rpf1-202	1735	345aa	ENSRNOP00000077854.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RJS9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,735 bps, Translation length: 345 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5RJS9

Version

ENSRNOT00000100500.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.