Transcript: ENST00000412539.1 SUSD5-202

Description

sushi domain containing 5 [Source:HGNC Symbol;Acc:HGNC:29061]

Gene Synonyms

KIAA0527

Location

Chromosome 3: 33,153,710-33,218,793 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 11 domains and features, is associated with 27184 variant alleles and maps to 159 oligo probes.

Gene

This transcript is a product of gene ENSG00000173705.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000309558.8	SUSD5-201	4602	629aa	ENSP00000308727.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46787	O60279	NM_015551.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000412539.1	SUSD5-202	729	243aa	ENSP00000406475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C2K7	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 729 bps, Translation length: 243 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000412539.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000412539.1 SUSD5-202

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Transcript: ENST00000412539.1 SUSD5-202

Summary

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