Transcript: ENST00000520792.6 FAM90A24-201

Description

family with sequence similarity 90 member A24 [Source:HGNC Symbol;Acc:HGNC:32272]

Gene Synonyms

FAM90A24P

Location

Chromosome 8: 8,019,988-8,022,998 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 12 domains and features, is associated with 4098 variant alleles and maps to 2445 oligo probes.

Gene

This transcript is a product of gene ENSG00000215354.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000520792.6	FAM90A24-201	1395	464aa	ENSP00000514267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		P0C7X0	NM_001423530.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000521100.1	FAM90A24-202	607	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,395 bps, Translation length: 464 residues

MANE

This MANE Select transcript contains ENSP00000514267 and matches to NM_001423530.1 and NP_001410459.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0C7X0

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000520792.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000520792.6 FAM90A24-201

Summary

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Transcript: ENST00000520792.6 FAM90A24-201

Summary

About Us

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