Transcript: ENST00000625377.3

Description

Novel protein

Location

About this transcript

This transcript has 23 exons, is annotated with 12 domains and features, is associated with 35359 variant alleles and maps to 2024 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000625377.3	-	4346	949aa	ENSP00000486581.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5576	A0A0D9SF80	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 23, Coding exons: 15, Transcript length: 4,346 bps, Translation length: 949 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS5576

Transcript Support Level (TSL)

TSL:5

Version

ENST00000625377.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.