Transcript: ENST00000630819.1 SMDT1-213

Description

single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]

Gene Synonyms

C22ORF32, DDDD, DJ186O1.1, EMRE

Location

Scaffold HSCHR22_3_CTG1: 2,036-5,698 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 1 domain and feature and maps to 227 oligo probes.

Gene

This transcript is a product of gene ENSG00000274112.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq Match	Flags
ENST00000615504.2	SMDT1-211	1567	107aa	ENSP00000485029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9H4I9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000630819.1	SMDT1-213	591	57aa	ENSP00000487546.1	Nonsense mediated decay	F8WDX6	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000630775.1	SMDT1-212	556	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 591 bps, Translation length: 57 residues

Transcript Support Level (TSL)

TSL:2

Version

ENST00000630819.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENST00000630819.1 SMDT1-213

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Transcript: ENST00000630819.1 SMDT1-213

Summary

About Us

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