Transcript: ENST00000643224.2 CD8B2-202

Description

CD8B family member 2 [Source:HGNC Symbol;Acc:HGNC:1708]

Gene Synonyms

CD8BP

Location

Chromosome 2: 106,487,364-106,511,095 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 13 domains and features, is associated with 10107 variant alleles and maps to 596 oligo probes.

Gene

This transcript is a product of gene ENSG00000254126.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000643224.2	CD8B2-202	4851	210aa	ENSP00000496416.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS86870	A6NJW9	NM_001349727.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENST00000416057.2	CD8B2-201	989	221aa	ENSP00000495575.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS92827	A0A2R8Y6U7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 4,851 bps, Translation length: 210 residues

MANE

This MANE Select transcript contains ENSP00000496416 and matches to NM_001349727.2 and NP_001336656.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NJW9

CCDS

This transcript is a member of the Human CCDS set: CCDS86870

Version

ENST00000643224.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported partial [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000643224.2 CD8B2-202

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Transcript: ENST00000643224.2 CD8B2-202

Summary

About Us

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