Transcript: FBtr0077517 Snx1-RA

Description

Sorting nexin 1

Gene Synonyms

Snx1

Location

About this transcript

This transcript has 5 exons, is annotated with 15 domains and features and maps to 30 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0077517	Snx1-RA	2028	458aa	FBpp0077206	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MS29 Q9VQQ6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0343238	Snx1-RB	2022	456aa	FBpp0309920	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D2NUH0 X2J8I7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,028 bps, Translation length: 458 residues

Version

FBtr0077517

Type

Protein coding

Annotation Method

Feature imported from FlyBase.