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| Status |
Public on Apr 27, 2019 |
| Title |
Transcriptome profiles of three Muscat table grape cultivars at three developmental stage |
| Organism |
Vitis vinifera |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Vitis vinifera is widely grown worldwide for making wine and for use as table grapes. Of the existing cultivars, some have a floral and fruity flavour, referred to as a Muscat flavour. It is well-documented that this flavour originates from a series of terpene compounds, but the mechanism of terpene content differences among the Muscat-type cultivars remains unclear. Transcript and terpene metabolite profiles were integrated to elucidate the molecular mechanism of this phenomenon. In this research, three genotypes with different aromatic strengths were investigated by RNA sequencing. A total of 27 fruit samples from three biological replicates were sequenced on Illumina HiSeq 2000 at three stages, corresponding to the veraison; berries had intermediate Brix value and were harvest-ripe. After quality assessment and data clearance, a total of 254.18 Gb of data with more than 97% Q20 bases were obtained, approximately 9.41 Gb data were generated per sample. These results will provide a valuable dataset for the discovery of the mechanism of terpene biosynthesis.
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| Overall design |
RNA sequence of 3 table grape cultvars at 3 developmental stages
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| Contributor(s) |
Sun L, Zhu B |
| Citation(s) |
31197176 |
| Submission date |
Apr 26, 2019 |
| Last update date |
Jul 01, 2019 |
| Contact name |
LEI SUN |
| E-mail(s) |
sunlei.bjfu@gmail.com
|
| Organization name |
BEIJING ACADEMY OF FORESTRY AND POMOLOGY SCIENCES
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| Street address |
A-12,RUIWANGFEN,XIANGSHAN
|
| City |
beijing |
| ZIP/Postal code |
100093 |
| Country |
China |
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| Platforms (1) |
| GPL18740 |
Illumina HiSeq 2000 (Vitis vinifera) |
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| Samples (27)
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| Relations |
| BioProject |
PRJNA539964 |
| SRA |
SRP193991 |
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