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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2006-08-12 19:25:22 UTC
Update Date2021-09-14 15:48:15 UTC
HMDB IDHMDB0003369
Secondary Accession Numbers
  • HMDB03369
Metabolite Identification
Common NameCDP-glucose
DescriptionCDP-glucose, also known as CDP-D-glucose or CDP-GLC, belongs to the class of organic compounds known as pyrimidine nucleotide sugars. These are pyrimidine nucleotides bound to a saccharide derivative through the terminal phosphate group. CDP-glucose has been detected, but not quantified in, a few different foods, such as anatidaes (Anatidae), chickens (Gallus gallus), and domestic pigs (Sus scrofa domestica). This could make CDP-glucose a potential biomarker for the consumption of these foods. CDP-glucose is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review a significant number of articles have been published on CDP-glucose.
Structure
Thumb
Synonyms
ValueSource
CDP-D-GlucoseChEBI
CDP-GLCChEBI
Cytidine diphosphate-glucoseMeSH, HMDB
CDP-a-D-GlucoseGenerator, HMDB
CDP-Α-D-glucoseGenerator, HMDB
CDP-GlucoseMeSH
Chemical FormulaC15H25N3O16P2
Average Molecular Weight565.317
Monoisotopic Molecular Weight565.071004791
IUPAC Name{[(2R,3S,4R,5R)-5-(4-amino-2-oxo-1,2-dihydropyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}({[hydroxy({[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphinic acid
Traditional Namecytidine diphosphate glucose
CAS Registry Number2906-23-2
SMILES
NC1=NC(=O)N(C=C1)[C@@H]1O[C@H](COP(O)(=O)OP(O)(=O)O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@@H](O)[C@H]1O
InChI Identifier
InChI=1S/C15H25N3O16P2/c16-7-1-2-18(15(25)17-7)13-11(23)9(21)6(31-13)4-30-35(26,27)34-36(28,29)33-14-12(24)10(22)8(20)5(3-19)32-14/h1-2,5-6,8-14,19-24H,3-4H2,(H,26,27)(H,28,29)(H2,16,17,25)/t5-,6-,8-,9-,10+,11-,12-,13-,14-/m1/s1
InChI KeyCGPHZDRCVSLMCF-JZMIEXBBSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrimidine nucleotide sugars. These are pyrimidine nucleotides bound to a saccharide derivative through the terminal phosphate group.
KingdomOrganic compounds
Super ClassNucleosides, nucleotides, and analogues
ClassPyrimidine nucleotides
Sub ClassPyrimidine nucleotide sugars
Direct ParentPyrimidine nucleotide sugars
Alternative Parents
Substituents
  • Pyrimidine nucleotide sugar
  • Pyrimidine ribonucleoside diphosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Glycosyl compound
  • N-glycosyl compound
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Aminopyrimidine
  • Pyrimidone
  • Monoalkyl phosphate
  • Hydropyrimidine
  • Monosaccharide
  • Organic phosphoric acid derivative
  • Oxane
  • Phosphoric acid ester
  • Pyrimidine
  • Imidolactam
  • Alkyl phosphate
  • Tetrahydrofuran
  • Heteroaromatic compound
  • Secondary alcohol
  • Polyol
  • Oxacycle
  • Organoheterocyclic compound
  • Azacycle
  • Organic oxide
  • Organonitrogen compound
  • Hydrocarbon derivative
  • Organic nitrogen compound
  • Amine
  • Primary amine
  • Organooxygen compound
  • Organopnictogen compound
  • Alcohol
  • Organic oxygen compound
  • Primary alcohol
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Cytoplasm (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023155
KNApSAcK IDC00019342
Chemspider ID388381
KEGG Compound IDC00501
BioCyc IDCDP-D-GLUCOSE
BiGG IDNot Available
Wikipedia LinkCytidine diphosphate glucose
METLIN ID6907
PubChem Compound439244
PDB IDNot Available
ChEBI ID28942
Food Biomarker OntologyNot Available
VMH IDCDPGLC
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceGinsburg, Victor; O'Brien, Paul J.; Hall, Clara W. Enzymic synthesis of cytidine 5'-diphosphate glucose. Biocherns Biophys. Res. Communs. (1962), 7 1-4.
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Chandra GR, Mandava N, Warthen JD Jr: Uridine diphosphate glucose:fatty acid glucosyl transferase activity of rape (Brassica napus L.) anther tissue. Biochim Biophys Acta. 1978 Oct 12;526(2):387-97. [PubMed:718943 ]
  2. Wojciechowski ZA, Zimowski J, Zimowski JG, Lyznik A: Specificity of sterol-glucosylating enzymes from Sinapis alba and Physarum polycephalum. Biochim Biophys Acta. 1979 Oct 11;570(2):363-70. [PubMed:497231 ]
  3. Mookerjea S: Effect of nucleotides on UDP-N-acetylglucosamine pyrophosphatase and N-acetylglucosaminyltransferase activities in microsomal membranes. Can J Biochem. 1979 Jun;57(6):557-65. [PubMed:476505 ]