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Showing metabocard for 3-hydroxyoctadecanoyl-CoA (HMDB0012715)

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IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (3) Show 3 proteinsXML
enzymes (3) Show 3 proteins
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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2009-07-25 00:05:54 UTC
Update Date2022-03-07 02:51:27 UTC
HMDB IDHMDB0012715
Secondary Accession Numbers
  • HMDB12715
Metabolite Identification
Common Name3-hydroxyoctadecanoyl-CoA
Description3-hydroxyoctadecanoyl-CoA is a human metabolite involved in the fatty acid elongation in mitochondria pathway. The enzyme long-chain-3-hydroxyacyl-CoA dehydrogenase catalyzes the conversion of 3-Oxododecanoyl-CoA to (S)-3-Hydroxydodecanoyl-CoA.3-hydroxyoctadecanoyl-CoA is an intermediate in fatty acid metabolism, being the substrate of the enzymes beta-hydroxyacyl-CoA dehydrogenase and 3-hydroxyacyl-CoA dehydrogenase [EC 1.1.1.211-1.1.1.35]; 3-hydroxyoctadecanoyl-CoA is an intermediate in fatty acid elongation in mitochondria, the substrate of the enzymes enoyl-CoA hydratase and long-chain-enoyl-CoA hydratase [EC 4.2.1.17-4.2.1.74]. (KEGG).
Structure
Thumb
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

  Mrv1652303262014172D          

 68 70  0  0  0  0            999 V2000
  -27.2006    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -26.4862    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -25.7717    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -25.0572    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -24.3427    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -23.6283    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -22.9138    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -22.1993    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -21.4849    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -20.7704    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -19.3414    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.6270    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.9125    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -15.0546    6.7971    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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  -13.6257    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9112    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D MOL for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

HMDB0012715
     RDKit          3D
3-hydroxyoctadecanoyl-CoA
138140  0  0  0  0  0  0  0  0999 V2000
   20.3695    0.0857   -0.5847 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3794   -0.8334    0.1201 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4200   -1.3105   -0.9221 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3596   -2.2335   -0.4273 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4849   -1.6411    0.6278 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8052   -0.4239    0.0708 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8765    0.2538    1.0567 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7713   -0.6817    1.5043 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9384   -1.1562    0.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2399   -0.0785   -0.4079 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2704    0.7024    0.4663 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5806    1.7818   -0.3510 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6081    2.5742    0.4484 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5351    1.6990    1.0301 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8001    0.9864   -0.0528 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7058    0.0826    0.4244 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0906   -0.5401   -0.6791 O   0  0  0  0  0  0  0  0  0  0  0  0
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    4.9083    1.8175    0.4940 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4209    2.9526    0.5540 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4309    1.6903   -0.4451 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.6316    0.1045   -0.4700 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9811   -0.3282    0.8059 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9383    0.6000    1.2122 N   0  0  0  0  0  0  0  0  0  0  0  0
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  -19.2176   -1.6183    0.8561 N   0  0  0  0  0  0  0  0  0  0  0  0
  -18.0498   -2.2618    0.6065 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.9594   -1.5448    0.3274 N   0  0  0  0  0  0  0  0  0  0  0  0
  -16.9416   -0.1968    0.2763 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9643   -0.3888    0.7548 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3085   -1.7115    0.6360 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5007   -0.1542    0.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2453   -0.8210   -0.8666 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0340   -1.9853   -0.6987 P   0  0  0  0  0  5  0  0  0  0  0  0
   -9.8734   -1.5764   -1.5726 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5755   -3.4892   -1.3155 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4894   -2.1398    0.8734 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.7757    0.7684    0.1858 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.8040    0.6833   -1.3528 H   0  0  0  0  0  0  0  0  0  0  0  0
   21.1942   -0.4902   -1.0397 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.9979   -1.6789    0.5328 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.9111   -0.2504    0.9237 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.0501   -1.7911   -1.7263 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.9980   -0.4062   -1.4303 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.7973   -2.6100   -1.3032 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.8931   -3.1285    0.0031 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.1261   -1.3233    1.4924 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.7718   -2.3688    1.0624 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.5795    0.3459   -0.1812 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.2430   -0.6258   -0.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.4657    1.1511    0.5588 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4859    0.5995    1.9115 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.1714   -1.5719    2.0244 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1674   -0.1333    2.2596 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5438   -1.7455   -0.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1555   -1.8337    0.7838 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6336   -0.5725   -1.1971 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9290    0.6084   -0.9364 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5199    0.0320    0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7998    1.2182    1.2944 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1337    1.2943   -1.2291 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3474    2.4831   -0.7825 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1117    3.2887   -0.2638 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1256    3.1845    1.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8784    2.3847    1.6210 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9943    1.0051    1.7506 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5519    0.2984   -0.5474 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4577    1.6541   -0.8686 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1158   -0.7302    1.0526 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8449   -1.4856   -0.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9137   -0.0264    1.5112 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0468    1.1319    2.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3614   -0.6864   -0.8388 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8724    0.1247   -1.2993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4591   -1.3019    0.5630 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6496   -0.5044    1.6478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0151    1.0878    2.1079 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8335    2.8269    0.9206 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6817    1.5104    1.7809 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8665    2.2878   -1.2088 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1041    2.6235    0.0212 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8325    0.2179   -1.5125 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5754   -2.2269   -0.0630 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1255   -1.8739    2.1165 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7579   -1.5633   -2.8851 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0360   -1.5873   -2.4674 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0241   -0.0149   -2.3776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0485   -3.5499   -1.1406 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.6920   -2.9389   -1.5971 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2597   -3.2013    0.1789 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3109   -0.6461   -1.2062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9821   -1.0078    0.5736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7724   -0.0337    0.4787 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.8801    1.5066   -2.0198 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.3280    1.8419    1.0083 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -17.9810   -3.3414    0.6285 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -14.3679   -2.1372    1.5498 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -12.0067   -3.9429   -0.5241 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0646   -2.7429    1.4264 H   0  0  0  0  0  0  0  0  0  0  0  0
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 68138  1  0
M  END
Download

3D SDF for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

  Mrv1652303262014172D          

 68 70  0  0  0  0            999 V2000
  -27.2006    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -26.4862    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -25.7717    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -25.0572    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -24.3427    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -23.6283    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -22.9138    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -22.1993    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -21.4849    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -20.7704    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -20.0559    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.3414    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -18.6270    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.9125    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.1980    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.4836    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.4836    6.7971    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -15.7691    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0546    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -15.0546    6.7971    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3401    8.0346    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6257    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9112    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1967    7.6221    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4823    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4823    8.8596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7678    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0533    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3389    7.6221    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6244    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6244    8.8596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9099    7.6221    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9099    6.7971    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1954    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.7829    7.3201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6079    8.7490    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4810    8.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7665    8.0346    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0520    8.4471    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6395    7.7326    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3376    8.8596    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6231    8.4471    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0356    7.7326    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9086    8.0346    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1941    8.4471    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4797    8.0346    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7260    8.3701    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1740    7.7570    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5865    7.0425    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2509    6.2889    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3934    7.2141    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0065    6.6620    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7911    6.9170    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5362    7.7016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6465    7.8433    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.1986    7.2302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9522    7.5657    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.8660    8.3862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.0590    8.5577    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8041    9.3423    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    1.3561    9.9554    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1631    9.7839    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
    2.4180    8.9993    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2250    8.8278    0.0000 N   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4645    9.1615    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2106    9.1615    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0461    6.1324    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5758    7.1719    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
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 18 19  1  0  0  0  0
 19 20  2  0  0  0  0
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 34 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
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 51 52  1  0  0  0  0
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 48 55  1  0  0  0  0
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 58 59  2  0  0  0  0
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 62 63  2  0  0  0  0
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 51 46  1  0  0  0  0
 59 55  1  0  0  0  0
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 65 39  1  0  0  0  0
 66 42  1  0  0  0  0
 67 53  1  0  0  0  0
 68 53  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0012715

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N

> <INCHI_IDENTIFIER>
InChI=1S/C39H70N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-27(47)22-30(49)68-21-20-41-29(48)18-19-42-37(52)34(51)39(2,3)24-61-67(58,59)64-66(56,57)60-23-28-33(63-65(53,54)55)32(50)38(62-28)46-26-45-31-35(40)43-25-44-36(31)46/h25-28,32-34,38,47,50-51H,4-24H2,1-3H3,(H,41,48)(H,42,52)(H,56,57)(H,58,59)(H2,40,43,44)(H2,53,54,55)

> <INCHI_KEY>
WZMAIEGYXCOYSH-UHFFFAOYSA-N

> <FORMULA>
C39H70N7O18P3S

> <MOLECULAR_WEIGHT>
1049.995

> <EXACT_MASS>
1049.371088697

> <JCHEM_ACCEPTOR_COUNT>
18

> <JCHEM_ATOM_COUNT>
138

> <JCHEM_AVERAGE_POLARIZABILITY>
105.06970860351608

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
10

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({[hydroxy(3-hydroxy-3-{[2-({2-[(3-hydroxyoctadecanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-2,2-dimethylpropoxy)phosphoryl]oxy})phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid

> <ALOGPS_LOGP>
2.19

> <JCHEM_LOGP>
0.2566356418520396

> <ALOGPS_LOGS>
-2.80

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-4

> <JCHEM_PKA>
1.900120734776186

> <JCHEM_PKA_STRONGEST_ACIDIC>
0.8209787813398175

> <JCHEM_PKA_STRONGEST_BASIC>
4.006053268556904

> <JCHEM_POLAR_SURFACE_AREA>
383.85999999999996

> <JCHEM_REFRACTIVITY>
247.36540000000005

> <JCHEM_ROTATABLE_BOND_COUNT>
36

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
1.66e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
[5-(6-aminopurin-9-yl)-4-hydroxy-2-({[hydroxy([hydroxy(3-hydroxy-3-{[2-({2-[(3-hydroxyoctadecanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-2,2-dimethylpropoxy)phosphoryl]oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxyphosphonic acid

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

HMDB0012715
     RDKit          3D
3-hydroxyoctadecanoyl-CoA
138140  0  0  0  0  0  0  0  0999 V2000
   20.3695    0.0857   -0.5847 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3794   -0.8334    0.1201 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.4200   -1.3105   -0.9221 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.3596   -2.2335   -0.4273 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4849   -1.6411    0.6278 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.8052   -0.4239    0.0708 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8765    0.2538    1.0567 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7713   -0.6817    1.5043 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9384   -1.1562    0.3519 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.2399   -0.0785   -0.4079 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2704    0.7024    0.4663 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5806    1.7818   -0.3510 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.6081    2.5742    0.4484 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.5351    1.6990    1.0301 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8001    0.9864   -0.0528 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7058    0.0826    0.4244 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0906   -0.5401   -0.6791 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.6219    0.7666    1.2180 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9083    1.8175    0.4940 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4209    2.9526    0.5540 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.4309    1.6903   -0.4451 S   0  0  0  0  0  0  0  0  0  0  0  0
    2.6316    0.1045   -0.4700 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9811   -0.3282    0.8059 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9383    0.6000    1.2122 N   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1935    0.8456    0.3870 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3334    0.2671   -0.7254 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2526    1.7978    0.8131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3106    1.8875   -0.2797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9286    0.6125   -0.5547 N   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6421   -0.1246    0.4032 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7214    0.4033    1.5679 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2993   -1.4165    0.2236 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8569   -1.8672    1.4352 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3966   -1.4553   -0.7982 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9807   -1.1116   -2.1884 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9005   -2.9034   -0.8310 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5890   -0.6071   -0.3747 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1693    0.7162   -0.2203 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3966    1.7499    0.2387 P   0  0  0  0  0  5  0  0  0  0  0  0
   -6.9159    2.6923    1.3338 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7063    0.8797    0.8141 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8686    2.7430   -1.0696 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2149    2.0795   -1.8266 P   0  0  0  0  0  5  0  0  0  0  0  0
   -9.9062    3.1937   -2.6074 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7304    0.9335   -2.9530 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2916    1.4891   -0.6799 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6073    1.8194   -0.9862 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5689    1.3184    0.0362 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.8823    1.6361   -0.2372 O   0  0  0  0  0  0  0  0  0  0  0  0
  -14.6469    0.5014   -0.2824 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.0152    0.7429    0.0278 N   0  0  0  0  0  0  0  0  0  0  0  0
  -16.5987    1.9478    0.1217 C   0  0  0  0  0  0  0  0  0  0  0  0
  -17.9013    1.7482    0.4322 N   0  0  0  0  0  0  0  0  0  0  0  0
  -18.1630    0.4342    0.5388 C   0  0  0  0  0  0  0  0  0  0  0  0
  -19.3032   -0.2801    0.8294 C   0  0  0  0  0  0  0  0  0  0  0  0
  -20.5510    0.3288    1.0995 N   0  0  0  0  0  0  0  0  0  0  0  0
  -19.2176   -1.6183    0.8561 N   0  0  0  0  0  0  0  0  0  0  0  0
  -18.0498   -2.2618    0.6065 C   0  0  0  0  0  0  0  0  0  0  0  0
  -16.9594   -1.5448    0.3274 N   0  0  0  0  0  0  0  0  0  0  0  0
  -16.9416   -0.1968    0.2763 C   0  0  0  0  0  0  0  0  0  0  0  0
  -13.9643   -0.3888    0.7548 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3085   -1.7115    0.6360 O   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5007   -0.1542    0.3181 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2453   -0.8210   -0.8666 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0340   -1.9853   -0.6987 P   0  0  0  0  0  5  0  0  0  0  0  0
   -9.8734   -1.5764   -1.5726 O   0  0  0  0  0  0  0  0  0  0  0  0
  -11.5755   -3.4892   -1.3155 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4894   -2.1398    0.8734 O   0  0  0  0  0  0  0  0  0  0  0  0
   20.7757    0.7684    0.1858 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.8040    0.6833   -1.3528 H   0  0  0  0  0  0  0  0  0  0  0  0
   21.1942   -0.4902   -1.0397 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.9979   -1.6789    0.5328 H   0  0  0  0  0  0  0  0  0  0  0  0
   18.9111   -0.2504    0.9237 H   0  0  0  0  0  0  0  0  0  0  0  0
   19.0501   -1.7911   -1.7263 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.9980   -0.4062   -1.4303 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.7973   -2.6100   -1.3032 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.8931   -3.1285    0.0031 H   0  0  0  0  0  0  0  0  0  0  0  0
   17.1261   -1.3233    1.4924 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.7718   -2.3688    1.0624 H   0  0  0  0  0  0  0  0  0  0  0  0
   16.5795    0.3459   -0.1812 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.2430   -0.6258   -0.8533 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.4657    1.1511    0.5588 H   0  0  0  0  0  0  0  0  0  0  0  0
   15.4859    0.5995    1.9115 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.1714   -1.5719    2.0244 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.1674   -0.1333    2.2596 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5438   -1.7455   -0.3436 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1555   -1.8337    0.7838 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6336   -0.5725   -1.1971 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.9290    0.6084   -0.9364 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5199    0.0320    0.9235 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.7998    1.2182    1.2944 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1337    1.2943   -1.2291 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.3474    2.4831   -0.7825 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.1117    3.2887   -0.2638 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.1256    3.1845    1.2122 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8784    2.3847    1.6210 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.9943    1.0051    1.7506 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5519    0.2984   -0.5474 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4577    1.6541   -0.8686 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1158   -0.7302    1.0526 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8449   -1.4856   -0.4464 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.9137   -0.0264    1.5112 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0468    1.1319    2.1998 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3614   -0.6864   -0.8388 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.8724    0.1247   -1.2993 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4591   -1.3019    0.5630 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6496   -0.5044    1.6478 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.0151    1.0878    2.1079 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

HEADER    PROTEIN                                 26-MAR-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   26-MAR-20         0                                  
HETATM    1  C   UNK     0     -50.774  14.998   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0     -49.441  14.228   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -48.107  14.998   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -46.773  14.228   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -45.440  14.998   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -44.106  14.228   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -42.772  14.998   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -41.439  14.228   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -40.105  14.998   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -38.771  14.228   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0     -37.438  14.998   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0     -36.104  14.228   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0     -34.770  14.998   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0     -33.437  14.228   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0     -32.103  14.998   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0     -30.769  14.228   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0     -30.769  12.688   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0     -29.436  14.998   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0     -28.102  14.228   0.000  0.00  0.00           C+0
HETATM   20  O   UNK     0     -28.102  12.688   0.000  0.00  0.00           O+0
HETATM   21  S   UNK     0     -26.768  14.998   0.000  0.00  0.00           S+0
HETATM   22  C   UNK     0     -25.435  14.228   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0     -24.101  14.998   0.000  0.00  0.00           C+0
HETATM   24  N   UNK     0     -22.767  14.228   0.000  0.00  0.00           N+0
HETATM   25  C   UNK     0     -21.434  14.998   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0     -21.434  16.538   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0     -20.100  14.228   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0     -18.766  14.998   0.000  0.00  0.00           C+0
HETATM   29  N   UNK     0     -17.433  14.228   0.000  0.00  0.00           N+0
HETATM   30  C   UNK     0     -16.099  14.998   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0     -16.099  16.538   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0     -14.765  14.228   0.000  0.00  0.00           C+0
HETATM   33  O   UNK     0     -14.765  12.688   0.000  0.00  0.00           O+0
HETATM   34  C   UNK     0     -13.431  14.998   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0     -12.661  13.664   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0     -14.201  16.331   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0     -12.098  15.768   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0     -10.764  14.998   0.000  0.00  0.00           O+0
HETATM   39  P   UNK     0      -9.430  15.768   0.000  0.00  0.00           P+0
HETATM   40  O   UNK     0      -8.660  14.434   0.000  0.00  0.00           O+0
HETATM   41  O   UNK     0      -8.097  16.538   0.000  0.00  0.00           O+0
HETATM   42  P   UNK     0      -6.763  15.768   0.000  0.00  0.00           P+0
HETATM   43  O   UNK     0      -7.533  14.434   0.000  0.00  0.00           O+0
HETATM   44  O   UNK     0      -5.429  14.998   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -4.096  15.768   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -2.762  14.998   0.000  0.00  0.00           C+0
HETATM   47  O   UNK     0      -1.355  15.624   0.000  0.00  0.00           O+0
HETATM   48  C   UNK     0      -0.325  14.480   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      -1.095  13.146   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0      -0.468  11.739   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0      -2.601  13.466   0.000  0.00  0.00           C+0
HETATM   52  O   UNK     0      -3.745  12.436   0.000  0.00  0.00           O+0
HETATM   53  P   UNK     0      -5.210  12.912   0.000  0.00  0.00           P+0
HETATM   54  O   UNK     0      -4.734  14.376   0.000  0.00  0.00           O+0
HETATM   55  N   UNK     0       1.207  14.641   0.000  0.00  0.00           N+0
HETATM   56  C   UNK     0       2.237  13.496   0.000  0.00  0.00           C+0
HETATM   57  N   UNK     0       3.644  14.123   0.000  0.00  0.00           N+0
HETATM   58  C   UNK     0       3.483  15.654   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       1.977  15.974   0.000  0.00  0.00           C+0
HETATM   60  N   UNK     0       1.501  17.439   0.000  0.00  0.00           N+0
HETATM   61  C   UNK     0       2.531  18.583   0.000  0.00  0.00           C+0
HETATM   62  N   UNK     0       4.038  18.263   0.000  0.00  0.00           N+0
HETATM   63  C   UNK     0       4.514  16.799   0.000  0.00  0.00           C+0
HETATM   64  N   UNK     0       6.020  16.479   0.000  0.00  0.00           N+0
HETATM   65  O   UNK     0     -10.200  17.101   0.000  0.00  0.00           O+0
HETATM   66  O   UNK     0      -5.993  17.101   0.000  0.00  0.00           O+0
HETATM   67  O   UNK     0      -5.686  11.447   0.000  0.00  0.00           O+0
HETATM   68  O   UNK     0      -6.675  13.388   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17   18                                                  
CONECT   17   16                                                            
CONECT   18   16   19                                                       
CONECT   19   18   20   21                                                  
CONECT   20   19                                                            
CONECT   21   19   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26   27                                                  
CONECT   26   25                                                            
CONECT   27   25   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31   32                                                  
CONECT   31   30                                                            
CONECT   32   30   33   34                                                  
CONECT   33   32                                                            
CONECT   34   32   35   36   37                                             
CONECT   35   34                                                            
CONECT   36   34                                                            
CONECT   37   34   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40   41   65                                             
CONECT   40   39                                                            
CONECT   41   39   42                                                       
CONECT   42   41   43   44   66                                             
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47   51                                                  
CONECT   47   46   48                                                       
CONECT   48   47   49   55                                                  
CONECT   49   48   50   51                                                  
CONECT   50   49                                                            
CONECT   51   49   52   46                                                  
CONECT   52   51   53                                                       
CONECT   53   52   54   67   68                                             
CONECT   54   53                                                            
CONECT   55   48   56   59                                                  
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59   63                                                  
CONECT   59   58   60   55                                                  
CONECT   60   59   61                                                       
CONECT   61   60   62                                                       
CONECT   62   61   63                                                       
CONECT   63   62   64   58                                                  
CONECT   64   63                                                            
CONECT   65   39                                                            
CONECT   66   42                                                            
CONECT   67   53                                                            
CONECT   68   53                                                            
MASTER        0    0    0    0    0    0    0    0   68    0  140    0
END
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3D PDB for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

COMPND    HMDB0012715
HETATM    1  C1  UNL     1      20.370   0.086  -0.585  1.00  0.00           C  
HETATM    2  C2  UNL     1      19.379  -0.833   0.120  1.00  0.00           C  
HETATM    3  C3  UNL     1      18.420  -1.310  -0.922  1.00  0.00           C  
HETATM    4  C4  UNL     1      17.360  -2.233  -0.427  1.00  0.00           C  
HETATM    5  C5  UNL     1      16.485  -1.641   0.628  1.00  0.00           C  
HETATM    6  C6  UNL     1      15.805  -0.424   0.071  1.00  0.00           C  
HETATM    7  C7  UNL     1      14.877   0.254   1.057  1.00  0.00           C  
HETATM    8  C8  UNL     1      13.771  -0.682   1.504  1.00  0.00           C  
HETATM    9  C9  UNL     1      12.938  -1.156   0.352  1.00  0.00           C  
HETATM   10  C10 UNL     1      12.240  -0.079  -0.408  1.00  0.00           C  
HETATM   11  C11 UNL     1      11.270   0.702   0.466  1.00  0.00           C  
HETATM   12  C12 UNL     1      10.581   1.782  -0.351  1.00  0.00           C  
HETATM   13  C13 UNL     1       9.608   2.574   0.448  1.00  0.00           C  
HETATM   14  C14 UNL     1       8.535   1.699   1.030  1.00  0.00           C  
HETATM   15  C15 UNL     1       7.800   0.986  -0.053  1.00  0.00           C  
HETATM   16  C16 UNL     1       6.706   0.083   0.424  1.00  0.00           C  
HETATM   17  O1  UNL     1       6.091  -0.540  -0.679  1.00  0.00           O  
HETATM   18  C17 UNL     1       5.622   0.767   1.218  1.00  0.00           C  
HETATM   19  C18 UNL     1       4.908   1.818   0.494  1.00  0.00           C  
HETATM   20  O2  UNL     1       5.421   2.953   0.554  1.00  0.00           O  
HETATM   21  S1  UNL     1       3.431   1.690  -0.445  1.00  0.00           S  
HETATM   22  C19 UNL     1       2.632   0.104  -0.470  1.00  0.00           C  
HETATM   23  C20 UNL     1       1.981  -0.328   0.806  1.00  0.00           C  
HETATM   24  N1  UNL     1       0.938   0.600   1.212  1.00  0.00           N  
HETATM   25  C21 UNL     1      -0.194   0.846   0.387  1.00  0.00           C  
HETATM   26  O3  UNL     1      -0.333   0.267  -0.725  1.00  0.00           O  
HETATM   27  C22 UNL     1      -1.253   1.798   0.813  1.00  0.00           C  
HETATM   28  C23 UNL     1      -2.311   1.887  -0.280  1.00  0.00           C  
HETATM   29  N2  UNL     1      -2.929   0.612  -0.555  1.00  0.00           N  
HETATM   30  C24 UNL     1      -3.642  -0.125   0.403  1.00  0.00           C  
HETATM   31  O4  UNL     1      -3.721   0.403   1.568  1.00  0.00           O  
HETATM   32  C25 UNL     1      -4.299  -1.416   0.224  1.00  0.00           C  
HETATM   33  O5  UNL     1      -4.857  -1.867   1.435  1.00  0.00           O  
HETATM   34  C26 UNL     1      -5.397  -1.455  -0.798  1.00  0.00           C  
HETATM   35  C27 UNL     1      -4.981  -1.112  -2.188  1.00  0.00           C  
HETATM   36  C28 UNL     1      -5.901  -2.903  -0.831  1.00  0.00           C  
HETATM   37  C29 UNL     1      -6.589  -0.607  -0.375  1.00  0.00           C  
HETATM   38  O6  UNL     1      -6.169   0.716  -0.220  1.00  0.00           O  
HETATM   39  P1  UNL     1      -7.397   1.750   0.239  1.00  0.00           P  
HETATM   40  O7  UNL     1      -6.916   2.692   1.334  1.00  0.00           O  
HETATM   41  O8  UNL     1      -8.706   0.880   0.814  1.00  0.00           O  
HETATM   42  O9  UNL     1      -7.869   2.743  -1.070  1.00  0.00           O  
HETATM   43  P2  UNL     1      -9.215   2.079  -1.827  1.00  0.00           P  
HETATM   44  O10 UNL     1      -9.906   3.194  -2.607  1.00  0.00           O  
HETATM   45  O11 UNL     1      -8.730   0.933  -2.953  1.00  0.00           O  
HETATM   46  O12 UNL     1     -10.292   1.489  -0.680  1.00  0.00           O  
HETATM   47  C30 UNL     1     -11.607   1.819  -0.986  1.00  0.00           C  
HETATM   48  C31 UNL     1     -12.569   1.318   0.036  1.00  0.00           C  
HETATM   49  O13 UNL     1     -13.882   1.636  -0.237  1.00  0.00           O  
HETATM   50  C32 UNL     1     -14.647   0.501  -0.282  1.00  0.00           C  
HETATM   51  N3  UNL     1     -16.015   0.743   0.028  1.00  0.00           N  
HETATM   52  C33 UNL     1     -16.599   1.948   0.122  1.00  0.00           C  
HETATM   53  N4  UNL     1     -17.901   1.748   0.432  1.00  0.00           N  
HETATM   54  C34 UNL     1     -18.163   0.434   0.539  1.00  0.00           C  
HETATM   55  C35 UNL     1     -19.303  -0.280   0.829  1.00  0.00           C  
HETATM   56  N5  UNL     1     -20.551   0.329   1.100  1.00  0.00           N  
HETATM   57  N6  UNL     1     -19.218  -1.618   0.856  1.00  0.00           N  
HETATM   58  C36 UNL     1     -18.050  -2.262   0.607  1.00  0.00           C  
HETATM   59  N7  UNL     1     -16.959  -1.545   0.327  1.00  0.00           N  
HETATM   60  C37 UNL     1     -16.942  -0.197   0.276  1.00  0.00           C  
HETATM   61  C38 UNL     1     -13.964  -0.389   0.755  1.00  0.00           C  
HETATM   62  O14 UNL     1     -14.308  -1.712   0.636  1.00  0.00           O  
HETATM   63  C39 UNL     1     -12.501  -0.154   0.318  1.00  0.00           C  
HETATM   64  O15 UNL     1     -12.245  -0.821  -0.867  1.00  0.00           O  
HETATM   65  P3  UNL     1     -11.034  -1.985  -0.699  1.00  0.00           P  
HETATM   66  O16 UNL     1      -9.873  -1.576  -1.573  1.00  0.00           O  
HETATM   67  O17 UNL     1     -11.575  -3.489  -1.315  1.00  0.00           O  
HETATM   68  O18 UNL     1     -10.489  -2.140   0.873  1.00  0.00           O  
HETATM   69  H1  UNL     1      20.776   0.768   0.186  1.00  0.00           H  
HETATM   70  H2  UNL     1      19.804   0.683  -1.353  1.00  0.00           H  
HETATM   71  H3  UNL     1      21.194  -0.490  -1.040  1.00  0.00           H  
HETATM   72  H4  UNL     1      19.998  -1.679   0.533  1.00  0.00           H  
HETATM   73  H5  UNL     1      18.911  -0.250   0.924  1.00  0.00           H  
HETATM   74  H6  UNL     1      19.050  -1.791  -1.726  1.00  0.00           H  
HETATM   75  H7  UNL     1      17.998  -0.406  -1.430  1.00  0.00           H  
HETATM   76  H8  UNL     1      16.797  -2.610  -1.303  1.00  0.00           H  
HETATM   77  H9  UNL     1      17.893  -3.129   0.003  1.00  0.00           H  
HETATM   78  H10 UNL     1      17.126  -1.323   1.492  1.00  0.00           H  
HETATM   79  H11 UNL     1      15.772  -2.369   1.062  1.00  0.00           H  
HETATM   80  H12 UNL     1      16.580   0.346  -0.181  1.00  0.00           H  
HETATM   81  H13 UNL     1      15.243  -0.626  -0.853  1.00  0.00           H  
HETATM   82  H14 UNL     1      14.466   1.151   0.559  1.00  0.00           H  
HETATM   83  H15 UNL     1      15.486   0.600   1.911  1.00  0.00           H  
HETATM   84  H16 UNL     1      14.171  -1.572   2.024  1.00  0.00           H  
HETATM   85  H17 UNL     1      13.167  -0.133   2.260  1.00  0.00           H  
HETATM   86  H18 UNL     1      13.544  -1.745  -0.344  1.00  0.00           H  
HETATM   87  H19 UNL     1      12.155  -1.834   0.784  1.00  0.00           H  
HETATM   88  H20 UNL     1      11.634  -0.572  -1.197  1.00  0.00           H  
HETATM   89  H21 UNL     1      12.929   0.608  -0.936  1.00  0.00           H  
HETATM   90  H22 UNL     1      10.520   0.032   0.924  1.00  0.00           H  
HETATM   91  H23 UNL     1      11.800   1.218   1.294  1.00  0.00           H  
HETATM   92  H24 UNL     1      10.134   1.294  -1.229  1.00  0.00           H  
HETATM   93  H25 UNL     1      11.347   2.483  -0.782  1.00  0.00           H  
HETATM   94  H26 UNL     1       9.112   3.289  -0.264  1.00  0.00           H  
HETATM   95  H27 UNL     1      10.126   3.184   1.212  1.00  0.00           H  
HETATM   96  H28 UNL     1       7.878   2.385   1.621  1.00  0.00           H  
HETATM   97  H29 UNL     1       8.994   1.005   1.751  1.00  0.00           H  
HETATM   98  H30 UNL     1       8.552   0.298  -0.547  1.00  0.00           H  
HETATM   99  H31 UNL     1       7.458   1.654  -0.869  1.00  0.00           H  
HETATM  100  H32 UNL     1       7.116  -0.730   1.053  1.00  0.00           H  
HETATM  101  H33 UNL     1       5.845  -1.486  -0.446  1.00  0.00           H  
HETATM  102  H34 UNL     1       4.914  -0.026   1.511  1.00  0.00           H  
HETATM  103  H35 UNL     1       6.047   1.132   2.200  1.00  0.00           H  
HETATM  104  H36 UNL     1       3.361  -0.686  -0.839  1.00  0.00           H  
HETATM  105  H37 UNL     1       1.872   0.125  -1.299  1.00  0.00           H  
HETATM  106  H38 UNL     1       1.459  -1.302   0.563  1.00  0.00           H  
HETATM  107  H39 UNL     1       2.650  -0.504   1.648  1.00  0.00           H  
HETATM  108  H40 UNL     1       1.015   1.088   2.108  1.00  0.00           H  
HETATM  109  H41 UNL     1      -0.833   2.827   0.921  1.00  0.00           H  
HETATM  110  H42 UNL     1      -1.682   1.510   1.781  1.00  0.00           H  
HETATM  111  H43 UNL     1      -1.866   2.288  -1.209  1.00  0.00           H  
HETATM  112  H44 UNL     1      -3.104   2.623   0.021  1.00  0.00           H  
HETATM  113  H45 UNL     1      -2.833   0.218  -1.513  1.00  0.00           H  
HETATM  114  H46 UNL     1      -3.575  -2.227  -0.063  1.00  0.00           H  
HETATM  115  H47 UNL     1      -4.126  -1.874   2.116  1.00  0.00           H  
HETATM  116  H48 UNL     1      -5.758  -1.563  -2.885  1.00  0.00           H  
HETATM  117  H49 UNL     1      -4.036  -1.587  -2.467  1.00  0.00           H  
HETATM  118  H50 UNL     1      -5.024  -0.015  -2.378  1.00  0.00           H  
HETATM  119  H51 UNL     1      -5.048  -3.550  -1.141  1.00  0.00           H  
HETATM  120  H52 UNL     1      -6.692  -2.939  -1.597  1.00  0.00           H  
HETATM  121  H53 UNL     1      -6.260  -3.201   0.179  1.00  0.00           H  
HETATM  122  H54 UNL     1      -7.311  -0.646  -1.206  1.00  0.00           H  
HETATM  123  H55 UNL     1      -6.982  -1.008   0.574  1.00  0.00           H  
HETATM  124  H56 UNL     1      -8.772  -0.034   0.479  1.00  0.00           H  
HETATM  125  H57 UNL     1      -8.315   1.387  -3.712  1.00  0.00           H  
HETATM  126  H58 UNL     1     -11.880   1.507  -2.020  1.00  0.00           H  
HETATM  127  H59 UNL     1     -11.667   2.929  -0.989  1.00  0.00           H  
HETATM  128  H60 UNL     1     -12.328   1.842   1.008  1.00  0.00           H  
HETATM  129  H61 UNL     1     -14.501  -0.025  -1.257  1.00  0.00           H  
HETATM  130  H62 UNL     1     -16.106   2.904  -0.027  1.00  0.00           H  
HETATM  131  H63 UNL     1     -21.198   0.662   0.348  1.00  0.00           H  
HETATM  132  H64 UNL     1     -20.873   0.469   2.074  1.00  0.00           H  
HETATM  133  H65 UNL     1     -17.981  -3.341   0.629  1.00  0.00           H  
HETATM  134  H66 UNL     1     -14.052   0.038   1.755  1.00  0.00           H  
HETATM  135  H67 UNL     1     -14.368  -2.137   1.550  1.00  0.00           H  
HETATM  136  H68 UNL     1     -11.816  -0.432   1.132  1.00  0.00           H  
HETATM  137  H69 UNL     1     -12.007  -3.943  -0.524  1.00  0.00           H  
HETATM  138  H70 UNL     1     -11.065  -2.743   1.426  1.00  0.00           H  
CONECT    1    2   69   70   71
CONECT    2    3   72   73
CONECT    3    4   74   75
CONECT    4    5   76   77
CONECT    5    6   78   79
CONECT    6    7   80   81
CONECT    7    8   82   83
CONECT    8    9   84   85
CONECT    9   10   86   87
CONECT   10   11   88   89
CONECT   11   12   90   91
CONECT   12   13   92   93
CONECT   13   14   94   95
CONECT   14   15   96   97
CONECT   15   16   98   99
CONECT   16   17   18  100
CONECT   17  101
CONECT   18   19  102  103
CONECT   19   20   20   21
CONECT   21   22
CONECT   22   23  104  105
CONECT   23   24  106  107
CONECT   24   25  108
CONECT   25   26   26   27
CONECT   27   28  109  110
CONECT   28   29  111  112
CONECT   29   30  113
CONECT   30   31   31   32
CONECT   32   33   34  114
CONECT   33  115
CONECT   34   35   36   37
CONECT   35  116  117  118
CONECT   36  119  120  121
CONECT   37   38  122  123
CONECT   38   39
CONECT   39   40   40   41   42
CONECT   41  124
CONECT   42   43
CONECT   43   44   44   45   46
CONECT   45  125
CONECT   46   47
CONECT   47   48  126  127
CONECT   48   49   63  128
CONECT   49   50
CONECT   50   51   61  129
CONECT   51   52   60
CONECT   52   53   53  130
CONECT   53   54
CONECT   54   55   55   60
CONECT   55   56   57
CONECT   56  131  132
CONECT   57   58   58
CONECT   58   59  133
CONECT   59   60   60
CONECT   61   62   63  134
CONECT   62  135
CONECT   63   64  136
CONECT   64   65
CONECT   65   66   66   67   68
CONECT   67  137
CONECT   68  138
END
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SMILES for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

CCCCCCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
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INCHI for HMDB0012715 (3-hydroxyoctadecanoyl-CoA)

InChI=1S/C39H70N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-27(47)22-30(49)68-21-20-41-29(48)18-19-42-37(52)34(51)39(2,3)24-61-67(58,59)64-66(56,57)60-23-28-33(63-65(53,54)55)32(50)38(62-28)46-26-45-31-35(40)43-25-44-36(31)46/h25-28,32-34,38,47,50-51H,4-24H2,1-3H3,(H,41,48)(H,42,52)(H,56,57)(H,58,59)(H2,40,43,44)(H2,53,54,55)
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View in JSmolView Stereo Labels
Synonyms
ValueSource
beta-Hydroxy stearyl-CoAHMDB
beta-Hydroxystearoyl-CoAHMDB
3-Hydroxyoctadecanoyl-coenzyme AHMDB
3-Hydroxyoctadecanoyl-CoAMeSH
Chemical FormulaC39H70N7O18P3S
Average Molecular Weight1049.995
Monoisotopic Molecular Weight1049.371088697
IUPAC Name{[5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({[hydroxy(3-hydroxy-3-{[2-({2-[(3-hydroxyoctadecanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-2,2-dimethylpropoxy)phosphoryl]oxy})phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid
Traditional Name[5-(6-aminopurin-9-yl)-4-hydroxy-2-({[hydroxy([hydroxy(3-hydroxy-3-{[2-({2-[(3-hydroxyoctadecanoyl)sulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-2,2-dimethylpropoxy)phosphoryl]oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxyphosphonic acid
CAS Registry Number42578-91-6
SMILES
CCCCCCCCCCCCCCCC(O)CC(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(O)(=O)OP(O)(=O)OCC1OC(C(O)C1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C39H70N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-27(47)22-30(49)68-21-20-41-29(48)18-19-42-37(52)34(51)39(2,3)24-61-67(58,59)64-66(56,57)60-23-28-33(63-65(53,54)55)32(50)38(62-28)46-26-45-31-35(40)43-25-44-36(31)46/h25-28,32-34,38,47,50-51H,4-24H2,1-3H3,(H,41,48)(H,42,52)(H,56,57)(H,58,59)(H2,40,43,44)(H2,53,54,55)
InChI KeyWZMAIEGYXCOYSH-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as long-chain fatty acyl coas. These are acyl CoAs where the group acylated to the coenzyme A moiety is a long aliphatic chain of 13 to 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct ParentLong-chain fatty acyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside 3',5'-bisphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside diphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Beta amino acid or derivatives
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • Imidolactam
  • N-acyl-amine
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Monosaccharide
  • Pyrimidine
  • Alkyl phosphate
  • Fatty amide
  • Phosphoric acid ester
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Heteroaromatic compound
  • Carbothioic s-ester
  • Secondary alcohol
  • Thiocarboxylic acid ester
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Organosulfur compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Primary amine
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Alcohol
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
Process
Naturally occurring process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties
Spectra
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID168203
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound193824
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Enzymes

Enzyme Details
1. Estradiol 17-beta-dehydrogenase 12
General function:
Involved in oxidoreductase activity
Specific function:
Catalyzes the transformation of estrone (E1) into estradiol (E2), suggesting a central role in estrogen formation. Its strong expression in ovary and mammary gland suggest that it may constitute the major enzyme responsible for the conversion of E1 to E2 in women. Also has 3-ketoacyl-CoA reductase activity, reducing both long chain 3-ketoacyl-CoAs and long chain fatty acyl-CoAs, suggesting a role in long fatty acid elongation.
Gene Name:
HSD17B12
Uniprot ID:
Q53GQ0
Molecular weight:
34323.875
Reactions
3-Oxooctadecanoyl-CoA + NADPH + Hydrogen Ion → 3-hydroxyoctadecanoyl-CoA + NADPdetails
Enzyme Details
2. Elongation of very long chain fatty acids protein 1
General function:
Involved in protein binding
Specific function:
Condensing enzyme that catalyzes the synthesis of both saturated and monounsaturated very long chain fatty acids. Exhibits activity toward saturated C18 to C26 acyl-CoA substrates, with the highest activity towards C22:0 acyl-CoA. Important for saturated C24:0 and monounsaturated C24:1 sphingolipid synthesis.
Gene Name:
ELOVL1
Uniprot ID:
Q9BW60
Molecular weight:
32662.49
Enzyme Details
3. Cyclin-dependent kinase 2-interacting protein
General function:
Involved in cell cycle
Specific function:
Interacts with the components of the replication complex and 2 kinases, CDK2 and CDC7, thereby providing a functional and physical link between CDK2 and CDC7 during firing of the origins of replication. Regulates ATR-mediated checkpoint signaling
Gene Name:
CINP
Uniprot ID:
Q9BW66
Molecular weight:
24323.6