Hmdb loader
Show more...
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-03-21 06:06:55 UTC
Update Date2021-09-14 15:45:08 UTC
HMDB IDHMDB0062367
Secondary Accession Numbers
  • HMDB62367
Metabolite Identification
Common Name(13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA
Description(13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA, also known as 3-oxo-docosa-13,16,19-all-cis-trienoyl-CoA, belongs to the class of organic compounds known as very-long-chain 3-oxoacyl CoAs. These are organic compounds containing a coenzyme A derivative which has a 3-oxo acylated long aliphatic chain of 22 carbon atoms or more. (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA is considered to be a practically insoluble (in water) and relatively neutral molecule.
Structure
Thumb
Synonyms
ValueSource
(13Z,16Z,19Z)-3-Ketodocosatrienoyl-CoAChEBI
(13Z,16Z,19Z)-3-Ketodocosatrienoyl-coenzyme AChEBI
(13Z,16Z,19Z)-3-Oxodocosatrienoyl-coenzyme AChEBI
3-oxo-all-cis-(Omega-3)-docosatrienoyl-CoAChEBI
3-oxo-C22:3(Omega-3)-CoAChEBI
3-oxo-all-cis-Docosa-13,16,19-trienoyl-CoAHMDB
3-oxo-all-cis-Docosa-13,16,19-trienoyl-coenzyme AHMDB
3-oxo-Docosa-13,16,19-all-cis-trienoyl-CoAHMDB
3-Keto-docosa-13,16,19-all-cis-trienoyl-CoAHMDB
Chemical FormulaC43H70N7O18P3S
Average Molecular Weight1098.05
Monoisotopic Molecular Weight1097.37109061
IUPAC Name{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-2,2-dimethyl-3-({2-[(2-{[(13Z,16Z,19Z)-3-oxodocosa-13,16,19-trienoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)propoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid
Traditional Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-({[hydroxy([hydroxy((3R)-3-hydroxy-2,2-dimethyl-3-({2-[(2-{[(13Z,16Z,19Z)-3-oxodocosa-13,16,19-trienoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)propoxy)phosphoryl]oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CC\C=C/C\C=C/C\C=C/CCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C43H70N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-31(51)26-34(53)72-25-24-45-33(52)22-23-46-41(56)38(55)43(2,3)28-65-71(62,63)68-70(60,61)64-27-32-37(67-69(57,58)59)36(54)42(66-32)50-30-49-35-39(44)47-29-48-40(35)50/h5-6,8-9,11-12,29-30,32,36-38,42,54-55H,4,7,10,13-28H2,1-3H3,(H,45,52)(H,46,56)(H,60,61)(H,62,63)(H2,44,47,48)(H2,57,58,59)/b6-5-,9-8-,12-11-/t32-,36-,37-,38+,42-/m1/s1
InChI KeyUERYNYFAFQPKQI-TYDLXKLOSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as very-long-chain 3-oxoacyl coas. These are organic compounds containing a coenzyme A derivative, which is 3-oxo acylated long aliphatic chain of 22 carbon atoms or more.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct ParentVery-long-chain 3-oxoacyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside 3',5'-bisphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside diphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose phosphate
  • Pentose-5-phosphate
  • Beta amino acid or derivatives
  • Glycosyl compound
  • N-glycosyl compound
  • 6-aminopurine
  • Monosaccharide phosphate
  • Organic pyrophosphate
  • Pentose monosaccharide
  • Imidazopyrimidine
  • Purine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • 1,3-dicarbonyl compound
  • Imidolactam
  • Monosaccharide
  • N-acyl-amine
  • N-substituted imidazole
  • Organic phosphoric acid derivative
  • Pyrimidine
  • Alkyl phosphate
  • Fatty amide
  • Phosphoric acid ester
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Heteroaromatic compound
  • Carbothioic s-ester
  • Secondary alcohol
  • Ketone
  • Thiocarboxylic acid ester
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Amino acid or derivatives
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Azacycle
  • Oxacycle
  • Carboxylic acid derivative
  • Organosulfur compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic nitrogen compound
  • Primary amine
  • Organopnictogen compound
  • Organic oxide
  • Organooxygen compound
  • Organonitrogen compound
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility15 g/lALOGPS
LogP-0.04ALOGPS
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+271.10930932474
DeepCCS[M-H]-269.38530932474
DeepCCS[M-2H]-303.62330932474
DeepCCS[M+Na]+277.58430932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 10V, Positive-QTOFsplash10-000i-5901220100-8116c5b7e31fadfb89412019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 20V, Positive-QTOFsplash10-000i-1911340000-13ce7e81a26a2c47e7952019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 40V, Positive-QTOFsplash10-000i-1900010000-a964ef7d89d91c9c816e2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 10V, Negative-QTOFsplash10-0059-9616240400-694e1dcba3995c88c7972019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 20V, Negative-QTOFsplash10-003r-5911310100-a58b7ecf27f6a9083c7c2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 40V, Negative-QTOFsplash10-057i-5900100000-84078f63d91a9e39ec552019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 10V, Positive-QTOFsplash10-000t-9000000000-e37b6ab750df695cb1452021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 20V, Positive-QTOFsplash10-01p9-9300000013-fccb20f14b15e8e032072021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 40V, Positive-QTOFsplash10-0006-0100390000-9749e5d738110d1836aa2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 10V, Negative-QTOFsplash10-0002-9000000000-66109440106362f5647d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 20V, Negative-QTOFsplash10-004s-9100101240-f723af02d4adf76b219c2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (13Z,16Z,19Z)-3-Oxodocosatrienoyl-CoA 40V, Negative-QTOFsplash10-00ou-9101201300-00f460f0bc0774d87e7b2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID29368368
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound71627162
PDB IDNot Available
ChEBI ID74608
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available