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Ccdc152 coiled-coil domain containing 152 [ Mus musculus (house mouse) ]

Gene ID: 100039139, updated on 8-Mar-2024

Summary

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Official Symbol
Ccdc152provided by MGI
Official Full Name
coiled-coil domain containing 152provided by MGI
Primary source
MGI:MGI:3641617
See related
Ensembl:ENSMUSG00000091119 AllianceGenome:MGI:3641617
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human CCDC152 (coiled-coil domain containing 152). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Ccdc152 in Genome Data Viewer
Location:
15 A1; 15 1.84 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (3309725..3334209, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (3280099..3303526, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_37812 Neighboring gene Ewing sarcoma breakpoint region 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_37813 Neighboring gene predicted gene, 30057 Neighboring gene selenoprotein P Neighboring gene predicted gene, 41254 Neighboring gene growth hormone receptor Neighboring gene Ghr downstream L1 promoter region Neighboring gene Ghr upstream L2 promoter region Neighboring gene predicted gene, 22031

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 152

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166063.3 → NP_001159535.1  coiled-coil domain-containing protein 152 isoform 1

    See identical proteins and their annotated locations for NP_001159535.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC166491
    Consensus CDS
    CCDS49571.1
    UniProtKB/TrEMBL
    E9PX14
    Related
    ENSMUSP00000129305.2, ENSMUST00000165386.2
    Conserved Domains (1) summary
    NF033930
    Location:74 → 247
    pneumo_PspA; pneumococcal surface protein A

  2. NM_001357801.2 → NP_001344730.1  coiled-coil domain-containing protein 152 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences in the coding region but maintains the reading frame, compared to variant 1. This variant encodes isoform 2, which is shorter than isoform 1.
    Source sequence(s)
    AC166491
    UniProtKB/TrEMBL
    A0A2I3BPP3
    Related
    ENSMUSP00000153740.2, ENSMUST00000228405.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    3309725..3334209 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159046.1 → XP_036014939.1  coiled-coil domain-containing protein 152 isoform X4

    UniProtKB/TrEMBL
    A0A2I3BPP3

  2. XM_036159043.1 → XP_036014936.1  coiled-coil domain-containing protein 152 isoform X2

    UniProtKB/TrEMBL
    A0A2I3BPP3

  3. XM_036159047.1 → XP_036014940.1  coiled-coil domain-containing protein 152 isoform X5

    UniProtKB/TrEMBL
    E9PX14
    Conserved Domains (1) summary
    NF033930
    Location:74 → 247
    pneumo_PspA; pneumococcal surface protein A

  4. XM_036159045.1 → XP_036014938.1  coiled-coil domain-containing protein 152 isoform X3

  5. XM_030248253.2 → XP_030104113.1  coiled-coil domain-containing protein 152 isoform X1

Nucleotide Protein
Heading Accession and Version

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