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Atf1-ps activating transcription factor 1, pseudogene [ Mus musculus (house mouse) ]

Gene ID: 100040260, updated on 8-Feb-2024

Summary

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Official Symbol
Atf1-psprovided by MGI
Official Full Name
activating transcription factor 1, pseudogeneprovided by MGI
Primary source
MGI:MGI:3037720
See related
AllianceGenome:MGI:3037720
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1862
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Genomic context

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Location:
X A5; X 30.06 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52885450..52886480, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53883464..53884513, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor, alpha-induced protein 1 (endothelial) pseudogene Neighboring gene predicted gene, 31171 Neighboring gene STARR-seq mESC enhancer starr_47194 Neighboring gene predicted gene 15482 Neighboring gene STARR-seq mESC enhancer starr_47195 Neighboring gene STARR-seq mESC enhancer starr_47196 Neighboring gene multifunctional methyltransferase subunit TRM112-like protein pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
  
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
involved_in regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
part_of ATF1-ATF4 transcription factor complex ISO
Inferred from Sequence Orthology
more info
  
part_of RNA polymerase II transcription regulator complex ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
cyclic AMP-dependent transcription factor ATF-1-like
Names
predicted pseudogene 1862

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    52885450..52886480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162179.1 → XP_036018072.1  cyclic AMP-dependent transcription factor ATF-1-like

    UniProtKB/TrEMBL
    Q922R4
    Conserved Domains (2) summary
    cd14690
    Location:213 → 267
    bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
    pfam02173
    Location:48 → 82
    pKID; pKID domain
Nucleotide Protein Strain
Heading Accession and Version

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