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Ect2l epithelial cell transforming sequence 2 oncogene-like [ Mus musculus (house mouse) ]

Gene ID: 100045792, updated on 8-Mar-2024

Summary

Official Symbol
Ect2lprovided by MGI
Official Full Name
epithelial cell transforming sequence 2 oncogene-likeprovided by MGI
Primary source
MGI:MGI:3641723
See related
Ensembl:ENSMUSG00000071392 AllianceGenome:MGI:3641723
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10331; C330021H03Rik
Summary
Orthologous to human ECT2L (epithelial cell transforming 2 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
10 A3; 10 7.47 cM
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (18004123..18086575, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (18128375..18210827, complement)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5120 Neighboring gene ABRA C-terminal like Neighboring gene RalBP1 associated Eps domain containing protein Neighboring gene STARR-seq mESC enhancer starr_25888 Neighboring gene STARR-seq mESC enhancer starr_25889 Neighboring gene STARR-positive B cell enhancer ABC_E8992 Neighboring gene STARR-positive B cell enhancer mm9_chr10:17930879-17931180 Neighboring gene coiled-coil domain containing 28A Neighboring gene STARR-positive B cell enhancer ABC_E8325 Neighboring gene predicted gene 10827

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
epithelial cell-transforming sequence 2 oncogene-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001195036.2NP_001181965.1  epithelial cell-transforming sequence 2 oncogene-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC153433, AC153562
    Consensus CDS
    CCDS56693.1
    UniProtKB/TrEMBL
    A0A140LHP3, F7CKP4
    Related
    ENSMUSP00000093497.5, ENSMUST00000095817.5
    Conserved Domains (4) summary
    pfam00621
    Location:578760
    RhoGEF; RhoGEF domain
    pfam12937
    Location:93130
    F-box-like
    pfam14252
    Location:298467
    DUF4347; Domain of unknown function (DUF4347)
    cl17171
    Location:790910
    PH-like; Pleckstrin homology-like domain
  2. NM_001370991.1NP_001357920.1  epithelial cell-transforming sequence 2 oncogene-like isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC153433, AC153562
    Consensus CDS
    CCDS87964.1
    UniProtKB/TrEMBL
    A0A140LHP3, A0A140LIP2
    Related
    ENSMUSP00000146899.2, ENSMUST00000208948.2
    Conserved Domains (4) summary
    pfam00621
    Location:620802
    RhoGEF; RhoGEF domain
    pfam12937
    Location:93130
    F-box-like
    pfam14252
    Location:298467
    DUF4347; Domain of unknown function (DUF4347)
    cl17171
    Location:832952
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    18004123..18086575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)