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TRF-GAA1-3 tRNA-Phe (anticodon GAA) 1-3 [ Homo sapiens (human) ]

Gene ID: 100189415, updated on 10-Oct-2023

Summary

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Official Symbol
TRF-GAA1-3provided by HGNC
Official Full Name
tRNA-Phe (anticodon GAA) 1-3provided by HGNC
Primary source
HGNC:HGNC:34984
See related
AllianceGenome:HGNC:34984
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAF11; TRF-GAA1-1
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Genomic context

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See TRF-GAA1-3 in Genome Data Viewer
Location:
11q12.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (59557497..59557569, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (59508420..59508492, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (59324970..59325042, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723575 Neighboring gene tRNA-Leu (anticodon TAA) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3364 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:59323862-59324052 Neighboring gene tRNA-Lys (anticodon TTT) 5-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3365 Neighboring gene RNA, U7 small nuclear 58 pseudogene Neighboring gene tRNA-Lys (anticodon TTT) 3-4 Neighboring gene long intergenic non-protein coding RNA 2739

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Phe (GAA) 1-3
  • tRNA-Phe-GAA-1-1
  • transfer RNA phenylalanine 11 (anticodon GAA)
  • transfer RNA-Phe (GAA) 1-1
  • transfer RNA-Phe (GAA) 1-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    59557497..59557569 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    59508420..59508492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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