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Nps neuropeptide S [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360071, updated on 13-Apr-2024

Summary

Official Symbol
Npsprovided by RGD
Official Full Name
neuropeptide Sprovided by RGD
Primary source
RGD:2324597
See related
Ensembl:ENSRNOG00000036653 AllianceGenome:RGD:2324597
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Involved in positive regulation of circadian sleep/wake cycle, wakefulness. Predicted to be located in extracellular region. Used to study morphine dependence. Orthologous to human NPS (neuropeptide S). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

Location:
1q41
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (199505772..199510915)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (190077040..190080821)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (207508414..207512195)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene dedicator of cyto-kinesis 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ubiquitin-conjugating enzyme E2 L3 pseudogene Neighboring gene uncharacterized LOC102551753 Neighboring gene keratin-associated protein 5-1-like

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271113.1NP_001258042.1  neuropeptide S precursor

    See identical proteins and their annotated locations for NP_001258042.1

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000001
    UniProtKB/Swiss-Prot
    P0C0P7
    Related
    ENSRNOP00000051780.2, ENSRNOT00000054896.3
    Conserved Domains (1) summary
    pfam14993
    Location:2488
    Neuropeptide_S; Neuropeptide S precursor protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    199505772..199510915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063281241.1XP_063137311.1  neuropeptide S isoform X1