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Ypel1 yippee-like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100360867, updated on 3-Apr-2024

Summary

Official Symbol
Ypel1provided by RGD
Official Full Name
yippee-like 1provided by RGD
Primary source
RGD:2321291
See related
AllianceGenome:RGD:2321291
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable metal ion binding activity. Orthologous to human YPEL1 (yippee like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 299.8), Thymus (RPKM 37.3) and 7 other tissues See more
Orthologs
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Genomic context

See Ypel1 in Genome Data Viewer
Location:
11q23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (97426012..97440646, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (83921799..83936409, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (88171401..88186000, complement)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2610318N02 gene like Neighboring gene microRNA 130b Neighboring gene peptidylprolyl isomerase like 2 Neighboring gene mitogen activated protein kinase 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1F

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001426989.2NP_001413918.1  protein yippee-like 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000011
    UniProtKB/TrEMBL
    A6JSN7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    97426012..97440646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008768928.4XP_008767150.1  protein yippee-like 1 isoform X1

    See identical proteins and their annotated locations for XP_008767150.1

    UniProtKB/TrEMBL
    A6JSN7, A6K0A1
    Conserved Domains (1) summary
    cl13152
    Location:20108
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
  2. XM_063270227.1XP_063126297.1  protein yippee-like 1 isoform X2

  3. XM_063270226.1XP_063126296.1  protein yippee-like 1 isoform X2