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C13h1orf226 similar to human chromosome 1 open reading frame 226 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100361087, updated on 13-Apr-2024

Summary

Official Symbol
C13h1orf226provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 226provided by RGD
Primary source
RGD:2320873
See related
AllianceGenome:RGD:2320873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable nitric-oxide synthase binding activity. Orthologous to human C1orf226 (chromosome 1 open reading frame 226). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 71.0), Kidney (RPKM 51.2) and 9 other tissues See more
Orthologs
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Genomic context

See C13h1orf226 in Genome Data Viewer
Location:
13q24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (85063350..85071435, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (82530589..82538676, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (88636875..88642011, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene SH2 domain containing 1B2 Neighboring gene SH2 domain containing 1B Neighboring gene spermatogenesis associated 46 Neighboring gene nitric oxide synthase 1 adaptor protein Neighboring gene uncharacterized LOC120096313

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
uncharacterized protein C1orf226 homolog
Names
nitric oxide synthase 1 adaptor protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190459.2NP_001177388.2  uncharacterized protein C1orf226 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    85063350..85071435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)