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Ociad2 OCIA domain containing 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100361733, updated on 8-Mar-2024

Summary

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Official Symbol
Ociad2provided by RGD
Official Full Name
OCIA domain containing 2provided by RGD
Primary source
RGD:2319541
See related
Ensembl:ENSRNOG00000002196 AllianceGenome:RGD:2319541
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to act upstream of or within response to bacterium. Orthologous to human OCIAD2 (OCIA domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 169.8), Adrenal (RPKM 139.6) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ociad2 in Genome Data Viewer
Location:
14p11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (35225291..35243306)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (34873668..34889276)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (37432999..37449425)

Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 5, pseudogene 2 Neighboring gene uncharacterized LOC120096532 Neighboring gene OCIA domain containing 1 Neighboring gene uncharacterized LOC134481841 Neighboring gene FRY like transcription coactivator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article
  2. Proteomic analysis of the mouse liver mitochondrial inner membrane. Da Cruz S, et al. J Biol Chem, 2003 Oct 17. PMID 12865426
  3. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, et al. Cell, 2003 Nov 26. PMID 14651853

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
acts_upstream_of_or_within response to bacterium ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
OCIA domain-containing protein 2
Names
rCG57079-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271181.1 → NP_001258110.1  OCIA domain-containing protein 2

    See identical proteins and their annotated locations for NP_001258110.1

    Status: VALIDATED

    Source sequence(s)
    FM060772, FM129783, FM139638, FQ214213
    UniProtKB/TrEMBL
    A0A8I5ZV64, A6JD38
    Related
    ENSRNOP00000083291.1, ENSRNOT00000118089.1
    Conserved Domains (1) summary
    pfam07051
    Location:33 → 117
    OCIA; Ovarian carcinoma immunoreactive antigen (OCIA)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086032.1 Reference GRCr8

    Range
    35225291..35243306
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063272792.1 → XP_063128862.1  OCIA domain-containing protein 2 isoform X3

  2. XM_039091553.2 → XP_038947481.2  OCIA domain-containing protein 2 isoform X1

  3. XM_063272791.1 → XP_063128861.1  OCIA domain-containing protein 2 isoform X2

  4. XM_063272793.1 → XP_063128863.1  OCIA domain-containing protein 2 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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