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Zfp27 zinc finger protein 27 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100362022, updated on 2-May-2024

Summary

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Symbol
Zfp27provided by RGD
Full Name
zinc finger protein 27provided by RGD
Primary source
RGD:2318958
See related
Ensembl:ENSRNOG00000070848 AllianceGenome:RGD:2318958
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 22.2), Adrenal (RPKM 21.0) and 9 other tissues See more
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Genomic context

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See Zfp27 in Genome Data Viewer
Location:
1q21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (94243836..94258193, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (85117455..85130578, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (87771238..87788554, complement)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 790 like 2 Neighboring gene zinc finger protein 420 Neighboring gene zinc finger protein 420 Neighboring gene zinc finger protein 74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 27
Names
rCG53711-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    94243836..94258193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008759225.4 → XP_008757447.1  zinc finger protein 27

    See identical proteins and their annotated locations for XP_008757447.1

    UniProtKB/TrEMBL
    A0A8I5ZQ59
    Conserved Domains (5) summary
    smart00349
    Location:27 → 67
    KRAB; krueppel associated box
    COG5048
    Location:333 → 764
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:533 → 553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:27 → 66
    KRAB; KRAB box
    pfam13465
    Location:350 → 375
    zf-H2C2_2; Zinc-finger double domain

  2. XM_008759226.3 → XP_008757448.1  zinc finger protein 27

    See identical proteins and their annotated locations for XP_008757448.1

    UniProtKB/TrEMBL
    A0A8I5ZQ59
    Related
    ENSRNOP00000080440.1
    Conserved Domains (5) summary
    smart00349
    Location:27 → 67
    KRAB; krueppel associated box
    COG5048
    Location:333 → 764
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:533 → 553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:27 → 66
    KRAB; KRAB box
    pfam13465
    Location:350 → 375
    zf-H2C2_2; Zinc-finger double domain

  3. XM_017590507.3 → XP_017445996.1  zinc finger protein 27

    UniProtKB/TrEMBL
    A0A8I5ZQ59
    Conserved Domains (5) summary
    smart00349
    Location:27 → 67
    KRAB; krueppel associated box
    COG5048
    Location:333 → 764
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:533 → 553
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:27 → 66
    KRAB; KRAB box
    pfam13465
    Location:350 → 375
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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