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Znf81 zinc finger protein 81 [ Rattus norvegicus (Norway rat) ]

Gene ID: 100363372, updated on 26-Apr-2024

Summary

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Official Symbol
Znf81provided by RGD
Official Full Name
zinc finger protein 81provided by RGD
Primary source
RGD:2323171
See related
Ensembl:ENSRNOG00000066471 AllianceGenome:RGD:2323171
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Znf81L
Summary
Predicted to enable metal ion binding activity. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 45. Orthologous to human ZNF81 (zinc finger protein 81). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Thymus (RPKM 49.5), Heart (RPKM 46.7) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Znf81 in Genome Data Viewer
Location:
Xq11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (3581501..3679905, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (1030103..1126078, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (1034455..1112282, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene sperm acrosome associated 5 Neighboring gene zinc finger protein 182 Neighboring gene ubiquitously-expressed, prefoldin-like chaperone Neighboring gene ETS transcription factor ELK1 Neighboring gene complement factor properdin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 81
Names
zinc finger protein 81 (HFZ20)-like
zinc finger protein 81 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    3581501..3679905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039100629.2 → XP_038956557.1  zinc finger protein 81 isoform X3

    Conserved Domains (3) summary
    COG5048
    Location:275 → 600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:393 → 413
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:1 → 32
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_039100627.2 → XP_038956555.1  zinc finger protein 81 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AKM7
    Conserved Domains (3) summary
    smart00349
    Location:21 → 81
    KRAB; krueppel associated box
    COG5048
    Location:324 → 649
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:442 → 462
    ZF_C2H2; C2H2 Zn finger [structural motif]

  3. XM_063280425.1 → XP_063136495.1  zinc finger protein 81 isoform X3

  4. XM_063280422.1 → XP_063136492.1  zinc finger protein 81 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AKM7

  5. XM_063280424.1 → XP_063136494.1  zinc finger protein 81 isoform X3

  6. XM_063280426.1 → XP_063136496.1  zinc finger protein 81 isoform X4

  7. XM_063280423.1 → XP_063136493.1  zinc finger protein 81 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AHW2

  8. XM_063280420.1 → XP_063136490.1  zinc finger protein 81 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AKM7

  9. XM_063280421.1 → XP_063136491.1  zinc finger protein 81 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AKM7
Nucleotide Protein Strain
Heading Accession and Version

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