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LOC100365839 40S ribosomal protein S3a-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 100365839, updated on 29-Feb-2024

Summary

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Symbol
LOC100365839provided by RGD
Full Name
40S ribosomal protein S3a-likeprovided by RGD
Primary source
RGD:2318248
See related
Ensembl:ENSRNOG00000048109 AllianceGenome:RGD:2318248
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cell differentiation and translation. Predicted to be located in nucleus. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See LOC100365839 in Genome Data Viewer
Location:
11q23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (89647483..89648409)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (76142800..76143706)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (79547665..79548571)

Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene LIM domain containing preferred translocation partner in lipoma Neighboring gene small nucleolar RNA SNORA17 Neighboring gene microRNA 28 Neighboring gene uncharacterized LOC108352383 Neighboring gene U7 small nuclear RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phosphorylation and degradation of tomosyn-2 de-represses insulin secretion. Bhatnagar S, et al. J Biol Chem, 2014 Sep 5. PMID 25002582, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ribosomal subunit protein eS1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086029.1 Reference GRCr8

    Range
    89647483..89648409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039088726.2 → XP_038944654.1  small ribosomal subunit protein eS1-like

    UniProtKB/TrEMBL
    A0A8I6A843, M0R6L4
    Related
    ENSRNOP00000065066.1
    Conserved Domains (1) summary
    pfam01015
    Location:21 → 221
    Ribosomal_S3Ae; Ribosomal S3Ae family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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