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Cimip2b ciliary microtubule inner protein 2B [ Rattus norvegicus (Norway rat) ]

Gene ID: 100365928, updated on 8-Mar-2024

Summary

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Official Symbol
Cimip2bprovided by RGD
Official Full Name
ciliary microtubule inner protein 2Bprovided by RGD
Primary source
RGD:2318060
See related
Ensembl:ENSRNOG00000065204 AllianceGenome:RGD:2318060
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam166b
Summary
Orthologous to human FAM166B (family with sequence similarity 166 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 47.6), Uterus (RPKM 14.8) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Cimip2b in Genome Data Viewer
Location:
5q22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (62471246..62477812, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (57675537..57680133, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (58883064..58884136, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene unc-13 homolog B Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ATPase, class I, type 8B, member 5, pseudogene Neighboring gene uncharacterized LOC120102860 Neighboring gene RUN and SH3 domain containing 2 Neighboring gene uncharacterized LOC134486932 Neighboring gene testis associated actin remodelling kinase 1 Neighboring gene Cd72 molecule

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in axonemal microtubule ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ciliary microtubule inner protein 2B
Names
UPF0605 protein FAM166B-like
family with sequence similarity 166, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    62471246..62477812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063288530.1 → XP_063144600.1  ciliary microtubule inner protein 2B isoform X6

  2. XM_063288531.1 → XP_063144601.1  ciliary microtubule inner protein 2B isoform X7

  3. XM_063288529.1 → XP_063144599.1  ciliary microtubule inner protein 2B isoform X3

  4. XM_063288532.1 → XP_063144602.1  ciliary microtubule inner protein 2B isoform X8

  5. XM_039111008.2 → XP_038966936.1  ciliary microtubule inner protein 2B isoform X5

    Conserved Domains (1) summary
    pfam10629
    Location:16 → 45
    DUF2475; Protein of unknown function (DUF2475)

  6. XM_039111007.2 → XP_038966935.1  ciliary microtubule inner protein 2B isoform X4

    UniProtKB/TrEMBL
    A0A8I6AEA7
    Related
    ENSRNOP00000090412.1
    Conserved Domains (1) summary
    pfam10629
    Location:16 → 45
    DUF2475; Protein of unknown function (DUF2475)

  7. XM_063288533.1 → XP_063144603.1  ciliary microtubule inner protein 2B isoform X9

  8. XM_039111006.2 → XP_038966934.2  ciliary microtubule inner protein 2B isoform X2

  9. XM_039111005.2 → XP_038966933.1  ciliary microtubule inner protein 2B isoform X1

    Conserved Domains (1) summary
    pfam10629
    Location:16 → 45
    DUF2475; Protein of unknown function (DUF2475)
Nucleotide Protein Strain
Heading Accession and Version

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