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MIR548AA2 microRNA 548aa-2 [ Homo sapiens (human) ]

Gene ID: 100500895, updated on 10-Oct-2023

Summary

Official Symbol
MIR548AA2provided by HGNC
Official Full Name
microRNA 548aa-2provided by HGNC
Primary source
HGNC:HGNC:38921
See related
Ensembl:ENSG00000207688 miRBase:MI0016690; AllianceGenome:HGNC:38921
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
17q24.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (67471489..67471585)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (68347395..68347491)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (65467605..65467701)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1 Neighboring gene uncharacterized LOC124904046 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:65441636-65442194 Neighboring gene RNA, 7SL, cytoplasmic 756, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12624 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12626 Neighboring gene microRNA 548d-2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65515294-65515797 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65515798-65516300 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr17:65516301-65516804 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65516805-65517306 Neighboring gene Sharpr-MPRA regulatory region 6638 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65525829-65526481 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65535333-65535834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65535835-65536334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65551665-65552166 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65552167-65552666 Neighboring gene uncharacterized LOC124904045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12627 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65595554-65595782 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:65598997-65599506 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65636212-65636398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65651209-65651710 Neighboring gene uncharacterized LOC101928045

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Other Names

  • hsa-mir-548aa-2

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037517.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC110921
    Related
    ENST00000384955.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    67471489..67471585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    68347395..68347491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)