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ANKRD42-DT ANKRD42 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506282, updated on 10-Oct-2023

Summary

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Official Symbol
ANKRD42-DTprovided by HGNC
Official Full Name
ANKRD42 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55590
See related
Ensembl:ENSG00000247137 AllianceGenome:HGNC:55590
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.7), thyroid (RPKM 2.0) and 23 other tissues See more
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Genomic context

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Location:
11q14.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (83184491..83193669, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (83120964..83130142, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (82895533..82904711, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene BCAS2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5346 Neighboring gene uncharacterized LOC124902726 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3819 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5347 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:82868143-82868932 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3820 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:82877478-82878677 Neighboring gene PCF11 cleavage and polyadenylation factor subunit Neighboring gene PCF11 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5349 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5350 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:82904985-82905163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5351 Neighboring gene ankyrin repeat domain 42 Neighboring gene CDC28 protein kinase regulatory subunit 1B pseudogene 4 Neighboring gene ribosomal protein L32 pseudogene 24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ18398, DKFZp547G183

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149008.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK311356, AL359570, DB338067

  2. NR_149009.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA725607, DB338067, HY020377
    Related
    ENST00000602381.2

  3. NR_149010.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA418474, AL359570, AP000873, DB338067

  4. NR_149011.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL359570, BX110990, DB338067

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    83184491..83193669 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    83120964..83130142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_018705.1: Suppressed sequence

    Description
    NM_018705.1: This RefSeq was permanently suppressed because currently there is insufficient support for the protein.
Nucleotide Protein
Heading Accession and Version

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