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LINC01353 long intergenic non-protein coding RNA 1353 [ Homo sapiens (human) ]

Gene ID: 100506775, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01353provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1353provided by HGNC
Primary source
HGNC:HGNC:50580
See related
Ensembl:ENSG00000231507 AllianceGenome:HGNC:50580
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01353 in Genome Data Viewer
Location:
1q32.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (203287152..203288798)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (202549984..202551630)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (203256280..203257926)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene nucleophosmin 1 pseudogene 40 Neighboring gene uncharacterized LOC124904486 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr1:203241959-203242560 and GRCh37_chr1:203242561-203243162 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1717 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:203256086-203257285 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2343 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:203265487-203265988 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:203268313-203268517 Neighboring gene BTG2 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1719 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2345 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:203275924-203276866 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:203276867-203277809 Neighboring gene BTG anti-proliferation factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_117097.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL359090, AL513326, AW117362

  2. NR_117098.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' terminal exon and uses an alternate splice site in an internal exon resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    AW117362, CK902257
    Related
    ENST00000433008.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    203287152..203288798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    202549984..202551630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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