U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC02733 long intergenic non-protein coding RNA 2733 [ Homo sapiens (human) ]

Gene ID: 100507521, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC02733provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2733provided by HGNC
Primary source
HGNC:HGNC:54250
See related
Ensembl:ENSG00000255553 AllianceGenome:HGNC:54250
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LINC02733 in Genome Data Viewer
Location:
11q12.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (62049856..62082322, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (62039492..62071945, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3409 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3410 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4807 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4808 Neighboring gene NFE2L2 motif-containing MPRA enhancer 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4809 Neighboring gene uncharacterized LOC399900 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61745853-61746069 Neighboring gene ferritin heavy chain 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:61768209-61768961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61780893-61781393 Neighboring gene ribosomal protein S2 pseudogene 37 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4810 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:61797863-61798406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61798407-61798950 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:61811723-61812922 Neighboring gene NANOG hESC enhancer GRCh37_chr11:61870547-61871048 Neighboring gene uncharacterized LOC124902681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4812 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:61891773-61892354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61895837-61896336 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:61897363-61897864 Neighboring gene inner centromere protein Neighboring gene ReSE screen-validated silencer GRCh37_chr11:61912955-61913116

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

General gene information

Go to the top of the page Help

Markers

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183616.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003733
    Related
    ENST00000658933.1

  2. NR_183617.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP003733
    Related
    ENST00000524942.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    62049856..62082322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    62039492..62071945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases