Galnt6 polypeptide N-acetylgalactosaminyltransferase 6 [Cricetulus griseus (Chinese hamster)] - Gene

Summary

Gene symbol: Galnt6
Gene description: polypeptide N-acetylgalactosaminyltransferase 6
Locus tag: I79_024773
See related: Ensembl:ENSCGRG00015028592
Gene type: protein coding
RefSeq status: MODEL
Organism: Cricetulus griseus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
104	current	CriGri_1.0 (GCF_000223135.1)	Unplaced Scaffold	NW_003616774.1 (96589..101030, complement)
104	current	CriGri_1.0 (GCF_000223135.1)	Unplaced Scaffold	NW_003617687.1 (726..15610, complement)
104	current	CriGri-PICRH-1.0 (GCF_003668045.3)	2	NC_048595.1 (397151149..397171536, complement)

NW_003617687.1 Genomic Context describing neighboring genes

NW_003616774.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: polypeptide N-acetylgalactosaminyltransferase 6

Names: UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

NW_003616774.1 Reference CriGri_1.0 Primary Assembly

Range

96589..101030 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003514615.4 → XP_003514663.3 polypeptide N-acetylgalactosaminyltransferase 6 isoform X2

Conserved Domains (2) summary

pfam00652
Location:108 → 230

Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

cl11394
Location:1 → 96

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Reference CriGri_1.0 Primary Assembly

Genomic

NW_003617687.1 Reference CriGri_1.0 Primary Assembly

Range

726..15610 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_035438250.1 → XP_035294141.1 polypeptide N-acetylgalactosaminyltransferase 6 isoform X1

UniProtKB/TrEMBL

G3ILK5

Conserved Domains (1) summary

cl11394
Location:180 → 389

Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Alternate CriGri-PICRH-1.0

Genomic

NC_048595.1 Alternate CriGri-PICRH-1.0

Range

397151149..397171536 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_035439218.1 → XP_035295109.1 polypeptide N-acetylgalactosaminyltransferase 6 isoform X3

UniProtKB/TrEMBL

A0A3L7IAZ7

Related

ENSCGRP00015038263.1, ENSCGRT00015046590.2

Conserved Domains (2) summary

cd02510
Location:180 → 485

pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans

pfam00652
Location:497 → 619

Ricin_B_lectin; Ricin-type beta-trefoil lectin domain