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Sc5d sterol-C5-desaturase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100752960, updated on 8-Mar-2024

Summary

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Gene symbol
Sc5d
Gene description
sterol-C5-desaturase
See related
Ensembl:ENSCGRG00015031126
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615094.1 (108541..121568)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (153938636..153951913, complement)

NW_003615094.1Genomic Context describing neighboring genes Neighboring gene tubulin-specific chaperone cofactor E-like protein Neighboring gene sortilin related receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase
Names
lathosterol oxidase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615094.1 Reference CriGri_1.0 Primary Assembly

    Range
    108541..121568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007651891.4 → XP_007650081.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_007650081.1

    UniProtKB/TrEMBL
    A0A8C2MKA0
    Conserved Domains (2) summary
    COG3000
    Location:40 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:123 → 253
    FA_hydroxylase; Fatty acid hydroxylase superfamily

  2. XM_003511371.5 → XP_003511419.1  lathosterol oxidase

    See identical proteins and their annotated locations for XP_003511419.1

    UniProtKB/TrEMBL
    A0A8C2MKA0
    Conserved Domains (2) summary
    COG3000
    Location:40 → 257
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
    pfam04116
    Location:123 → 253
    FA_hydroxylase; Fatty acid hydroxylase superfamily

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    153938636..153951913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027411877.2 → XP_027267678.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A8C2MKA0
    Related
    ENSCGRP00015056869.1, ENSCGRT00015049087.1

  2. XM_027411876.2 → XP_027267677.1  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A8C2MKA0
    Related
    ENSCGRP00015044516.1, ENSCGRT00015064829.1
Nucleotide Protein Strain
Heading Accession and Version

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