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LOC100755796 solute carrier family 22 member 5 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100755796, updated on 19-Dec-2023

Summary

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Gene symbol
LOC100755796
Gene description
solute carrier family 22 member 5
See related
Ensembl:ENSCGRG00015023854
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Slc22a5
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615392.1 (130521..161348)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (68012253..68043651, complement)

NW_003615392.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 member 21 Neighboring gene cyclin-dependent kinase 4-like Neighboring gene uncharacterized LOC103162368 Neighboring gene uncharacterized LOC118237788

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
solute carrier family 22 member 5
Names
solute carrier family 22 (organic cation transporter), member 5
solute carrier family 22 (organic cation/carnitine transporter), member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615392.1 Reference CriGri_1.0 Primary Assembly

    Range
    130521..161348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035436766.1 → XP_035292657.1  solute carrier family 22 member 5 isoform X1

    UniProtKB/TrEMBL
    A0A8C2M534
    Conserved Domains (1) summary
    TIGR00898
    Location:12 → 520
    2A0119; cation transport protein

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    68012253..68043651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027427523.2 → XP_027283324.1  solute carrier family 22 member 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2M534, A0A9J7GG55
    Related
    ENSCGRP00015031671.2, ENSCGRT00015038682.2

  2. XM_027427522.2 → XP_027283323.1  solute carrier family 22 member 5 isoform X2

    UniProtKB/TrEMBL
    A0A8C2M534, A0A9J7GG39

  3. XM_035447807.1 → XP_035303698.1  solute carrier family 22 member 5 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GDR9
    Conserved Domains (1) summary
    TIGR00898
    Location:1 → 277
    2A0119; cation transport protein

  4. XM_035447808.1 → XP_035303699.1  solute carrier family 22 member 5 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GDR9
    Conserved Domains (1) summary
    TIGR00898
    Location:1 → 277
    2A0119; cation transport protein

  5. XM_027427524.2 → XP_027283325.1  solute carrier family 22 member 5 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GDR9
    Conserved Domains (1) summary
    TIGR00898
    Location:1 → 277
    2A0119; cation transport protein
Nucleotide Protein Strain
Heading Accession and Version

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