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LOC100758278 alpha-methylacyl-CoA racemase [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100758278, updated on 19-Dec-2023

Summary

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Gene symbol
LOC100758278
Gene description
alpha-methylacyl-CoA racemase
Locus tag
I79_010520
See related
Ensembl:ENSCGRG00015042418
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC100758278 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613986.1 (818..1583)
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614037.1 (2675..11090, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (344171252..344183929)

NW_003614037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103161680 Neighboring gene C1q and TNF related 3 Neighboring gene uncharacterized LOC118238395 Neighboring gene uncharacterized LOC118238394

NW_003613986.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 45 member 2 Neighboring gene uncharacterized LOC118238396 Neighboring gene relaxin family peptide receptor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-methylacyl-CoA racemase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bile acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-methylacyl-CoA racemase
Names
alpha-methylacyl-CoA racemase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613986.1 Reference CriGri_1.0 Primary Assembly

    Range
    818..1583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007644234.2 → XP_007642424.2  alpha-methylacyl-CoA racemase isoform X2

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614037.1 Reference CriGri_1.0 Primary Assembly

    Range
    2675..11090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016976508.3 → XP_016831997.1  alpha-methylacyl-CoA racemase isoform X1

    UniProtKB/TrEMBL
    A0A3L7I507
    Conserved Domains (1) summary
    COG1804
    Location:3 → 373
    CaiB; Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases [Lipid transport and metabolism]

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    344171252..344183929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027401272.2 → XP_027257073.1  alpha-methylacyl-CoA racemase isoform X4

    UniProtKB/TrEMBL
    A0A9J7FCX1

  2. XM_027401271.2 → XP_027257072.1  alpha-methylacyl-CoA racemase isoform X3

    UniProtKB/TrEMBL
    A0A3L7I507
    Related
    ENSCGRP00015038842.1, ENSCGRT00015066934.1
Nucleotide Protein Strain
Heading Accession and Version

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