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Cpt1a carnitine palmitoyltransferase 1A [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100762166, updated on 8-Mar-2024

Summary

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Gene symbol
Cpt1a
Gene description
carnitine palmitoyltransferase 1A
Locus tag
I79_018654
See related
Ensembl:ENSCGRG00015020332
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
13
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614870.1 (1810..24840)
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003620645.1 (1087..12178)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (55857600..55920606, complement)

NW_003620645.1Genomic Context describing neighboring genes

NW_003614870.1Genomic Context describing neighboring genes Neighboring gene testis expressed metallothionein like protein Neighboring gene galanin and GMAP prepropeptide Neighboring gene protein phosphatase 6 regulatory subunit 3 Neighboring gene something about silencing protein 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carnitine O-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carnitine O-palmitoyltransferase 1, liver isoform
Names
carnitine palmitoyltransferase 1A (liver)
carnitine palmitoyltransferase 1a, liver

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614870.1 Reference CriGri_1.0 Primary Assembly

    Range
    1810..24840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003510378.4 → XP_003510426.2  carnitine O-palmitoyltransferase 1, liver isoform isoform X1

    UniProtKB/TrEMBL
    A0A8C2QKQ4
    Conserved Domains (2) summary
    pfam00755
    Location:171 → 761
    Carn_acyltransf; Choline/Carnitine o-acyltransferase
    pfam16484
    Location:1 → 46
    CPT_N; Carnitine O-palmitoyltransferase N-terminus

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003620645.1 Reference CriGri_1.0 Primary Assembly

    Range
    1087..12178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003515845.4 → XP_003515893.3  carnitine O-palmitoyltransferase 1, liver isoform isoform X2

    Conserved Domains (1) summary
    pfam00755
    Location:224 → 286
    Carn_acyltransf; Choline/Carnitine o-acyltransferase

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    55857600..55920606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027408785.2 → XP_027264586.1  carnitine O-palmitoyltransferase 1, liver isoform isoform X3

    UniProtKB/TrEMBL
    A0A8C2QKQ4, A0A9J7JE20
    Related
    ENSCGRP00015026860.2, ENSCGRT00015032898.2
Nucleotide Protein Strain
Heading Accession and Version

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