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Galnt16 polypeptide N-acetylgalactosaminyltransferase 16 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100764829, updated on 8-Mar-2024

Summary

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Gene symbol
Galnt16
Gene description
polypeptide N-acetylgalactosaminyltransferase 16
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Galntl1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613686.1 (891445..931202, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (123040306..123076715, complement)

NW_003613686.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene ERH mRNA splicing and mitosis factor Neighboring gene exonuclease 3'-5' domain containing 2 Neighboring gene uncharacterized LOC103161562

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 16
Names
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613686.1 Reference CriGri_1.0 Primary Assembly

    Range
    891445..931202 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003498278.5 → XP_003498326.1  polypeptide N-acetylgalactosaminyltransferase 16 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MYN6
    Conserved Domains (4) summary
    cd02510
    Location:81 → 375
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    COG0463
    Location:81 → 177
    WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    cd00161
    Location:396 → 498
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:396 → 498
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    123040306..123076715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035445869.1 → XP_035301760.1  polypeptide N-acetylgalactosaminyltransferase 16 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MYN6, A0A9J7GZ47
    Conserved Domains (2) summary
    cd02510
    Location:81 → 375
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:396 → 468
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein Strain
Heading Accession and Version

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