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Slc6a6 solute carrier family 6 member 6 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100765478, updated on 11-Apr-2024

Summary

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Gene symbol
Slc6a6
Gene description
solute carrier family 6 member 6
See related
Ensembl:ENSCGRG00015013955
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613584.1 (1989445..2047004)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 8 NC_048601.1 (52051102..52122909, complement)

NW_003613584.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103159776 Neighboring gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene U6atac minor spliceosomal RNA Neighboring gene glutamate receptor interacting protein 2 Neighboring gene 40S ribosomal protein S11-like Neighboring gene coiled-coil domain containing 174

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables taurine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in taurine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sodium- and chloride-dependent taurine transporter
Names
Sodium- and chloride-dependent taurine transporter
solute carrier family 6 (neurotransmitter transporter), member 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613584.1 Reference CriGri_1.0 Primary Assembly

    Range
    1989445..2047004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007612783.4 → XP_007610973.1  sodium- and chloride-dependent taurine transporter isoform X1

    See identical proteins and their annotated locations for XP_007610973.1

    UniProtKB/TrEMBL
    G3GS17
    Conserved Domains (1) summary
    cl00456
    Location:51 → 592
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

  2. XM_003495171.5 → XP_003495219.1  sodium- and chloride-dependent taurine transporter isoform X2

    See identical proteins and their annotated locations for XP_003495219.1

    UniProtKB/TrEMBL
    A0A9J7K047
    Conserved Domains (1) summary
    cl00456
    Location:41 → 582
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048601.1 Alternate CriGri-PICRH-1.0

    Range
    52051102..52122909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027428886.2 → XP_027284687.1  sodium- and chloride-dependent taurine transporter isoform X1

    UniProtKB/TrEMBL
    G3GS17
    Related
    ENSCGRP00015018182.1, ENSCGRT00015022332.2

  2. XM_027428887.2 → XP_027284688.1  sodium- and chloride-dependent taurine transporter isoform X2

    UniProtKB/TrEMBL
    A0A9J7K047
    Related
    ENSCGRP00015045980.1, ENSCGRT00015054635.1
Nucleotide Protein Strain
Heading Accession and Version

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