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Sgpp1 sphingosine-1-phosphate phosphatase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766871, updated on 8-Mar-2024

Summary

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Gene symbol
Sgpp1
Gene description
sphingosine-1-phosphate phosphatase 1
Locus tag
I79_005352
See related
Ensembl:ENSCGRG00015027219
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613728.1 (1521805..1539097, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (127763874..127781635)

NW_003613728.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2 regulatory subunit B'epsilon Neighboring gene WD repeat domain 89 Neighboring gene uncharacterized LOC118238835 Neighboring gene spectrin repeat containing nuclear envelope protein 2 Neighboring gene estrogen receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613728.1 Reference CriGri_1.0 Primary Assembly

    Range
    1521805..1539097 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035452544.1 → XP_035308435.1  sphingosine-1-phosphate phosphatase 1 isoform X1

    Conserved Domains (2) summary
    COG3712
    Location:5 → 58
    FecR; periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]
    cd03388
    Location:117 → 266
    PAP2_SPPase1; PAP2_like proteins, sphingosine-1-phosphatase subfamily. Sphingosine-1-phosphatase is an intracellular enzyme located in the endoplasmic reticulum, which regulates the level of sphingosine-1-phosphate (S1P), a bioactive lipid. S1P acts as a second ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    127763874..127781635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027418264.2 → XP_027274065.1  sphingosine-1-phosphate phosphatase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LER7
    Related
    ENSCGRP00015036311.1, ENSCGRT00015044267.2
Nucleotide Protein Strain
Heading Accession and Version

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